Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00656 ATGACAGGATTTAAGGTTACCTTTATCCTCTTGGTGGCTTTTGCAATCACTATTCCATGCCTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTCAAAGCACAAGCTGATGAGGCCCGTGAAATTGCTCTTATGTCCTACGTTCCCAATCCCGAAAATGTCACTGACGAGCTCAATGTCCACGTTCATTTGGCAATGCAAGAGCATGAAAAAGAAGTAGGGTTATATTCAAATAGCACAAGGAGAGAATTAAAGCAAAAGTCAAAAAAGGGATCAGGACCATGCATAGCCACCAACCCAATTGACCGTTGTTGGAGGTGTAGGAAAAATTGGGCCACTGACCGCCAAAGGTTGGCAAAATGTGGCAAAGGTTTCGGAAGAAGGGCCGTCGGAGGACTCGGTGGCAGGATCTACGTCGTCACCGACGAGTCCGACAACGACATGGTAAACCCTAAACCTGGGACTCTGAGGTATGGTGTCGTCCAAAAAGGACCACTTTGGATCATCTTTGCACGTAGCATGGTGATTAGATTGAAGCAAGAATTGTTGGTCTCTTCTGACAAGACCATAGATGGTCGTGGAGCCAATGTTCAAATACGAGATGGTGCTGGCATTACCATGCAATTTGTCAACAATGTTATCATCCATGGCCTTCACATAAAAAAAGTTAGGGCTGCCAATGGTGGTATGATTAAGGATTCTTGGAACCATGTTGGACTAAGAACAAGGAGTGATGGTGATGCCATCTCTATTTTTGGCTCCTCAAACATTTGGATTGATCACCTTTCCTTGTCTGATTGTGAGGATGGTCTTGTTGATGTTATTCAGGGCTCTACCGCAGTCACCATCTCAAATTGCCACATGACCAAACACAATGATGTGATGTTGTTTGGGGCTAGTGATAGCTACAATGGGGACAAGATTATGCAAATTACAGTGGCATTCAACCATTTTGGTCAAGGATTGATCCAGAGGATGCCAAGATGTAGATGGGGTTTCTTCCATGTTTTGAACAATGACTACACTCATTGGTTGATGTATGCAATTGGTGGAAGCTCAGGGCCAACAATTCTTAGCCAGGGAAATCGTTTCATTGCACCAAACAACAATGCTGCTAAGGAGATCACACACAGAGACTACACAACACCAGCTGTGTGGTCTAGATGGCAATGGAGATCAGAGAATGACTTGTTCATGAATGGTGCAAAGTTTGTTGCCTCTGGAGCACCCATTGGTAAACTTCCATTCAACAAAGGTTTCCTAATGAAGCCAAGACCTGGATATCAAGCCAACAGGTTGACAAGGTTTGCTGGGACACTCAGTTGCAGGGTGGGTAGGCCTTGCTAG 1347 0.4477 MTGFKVTFILLVAFAITIPCLEAGIAEFDDFLKAQADEAREIALMSYVPNPENVTDELNVHVHLAMQEHEKEVGLYSNSTRRELKQKSKKGSGPCIATNPIDRCWRCRKNWATDRQRLAKCGKGFGRRAVGGLGGRIYVVTDESDNDMVNPKPGTLRYGVVQKGPLWIIFARSMVIRLKQELLVSSDKTIDGRGANVQIRDGAGITMQFVNNVIIHGLHIKKVRAANGGMIKDSWNHVGLRTRSDGDAISIFGSSNIWIDHLSLSDCEDGLVDVIQGSTAVTISNCHMTKHNDVMLFGASDSYNGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNNAAKEITHRDYTTPAVWSRWQWRSENDLFMNGAKFVASGAPIGKLPFNKGFLMKPRPGYQANRLTRFAGTLSCRVGRPC. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00656 448 SMART amb_all 173 370 IPR002022 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Seca1g00656 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Seca1g00656 448 SUPERFAMILY Pectin lyase-like 91 442 IPR011050 -
Seca1g00656 448 PANTHER PECTATE LYASE 18-RELATED 40 446 IPR045032 GO:0030570
Seca1g00656 448 Gene3D - 98 441 IPR012334 -
Seca1g00656 448 Pfam Pectate lyase, N terminus 25 84 IPR007524 GO:0030570
Seca1g00656 448 Pfam Pectate lyase 179 364 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00656 Seca-Chr1 8149962 8152414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00656 8 448 Polysaccharide Lyase AT1G14420 55.752 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00656 K01728 - gmx:100780236 724.546