Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00652 ATGTACGGATTCGAAGCTCTCACCTTCAACATCCACGGCGGTTACCTTGAGGCCATCGTCAGGGGCCACCGCGCCGGTTTGCTCACCACCGCCGATTACAACAATCTCTGCCAATGCGAATCCCTCGATGACATCAAGATGCACCTTTCCGCCACTGAGTATGGCCCTTACCTCCAAAACGAGCCTTCTCCATTGCATACCACCACAATTGTGGAGAAATGTACTCTTAAGCTGGTTGATGATTACAAGCACATGCTATGCCAAGCCACAGAACCCCTTTCAACCTTTTTAGAATATATCACATATGGTCACATGATAGACAATGTTGTTTTGATTGTTACTGGCACCTTGCATGAGAGAGATGTTCAAGAACTACTTGAAAAATGCCATCCACTGGGCATGTTTGACAGTATTGCTACTCTGGCAGTTGCTCAGAATATGCGGGAGCTTTACAGGCTGGTTCTTGTTGACACTCCTCTGGCTCCATATTTTTCTGAGTGCATTACATCAGAGGACTTGGATGATATGAACATTGAAATAATGAGGAACACTCTTTACAAAGCATACCTTGAAGACTTTTACAAATTCTGTCAGAAACTTGGTGGTGCCACTGCTGAGATAATGTCAGACCTTCTAGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGCATTGGTACTGAGCTTACCAGAGATGACCGTAGAAAACTGTACTCTAACTTCGGTTTGCTCTACCCATATGGTCATGAGGAACTTGCTGTCTGTGAGGACATAGATCAGGTTCGTGGTGTTATGGAAAAGTACCCCCCTTATCAATCTATTTTTGCTAAGTTATCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTCTATGAGGAGGAGTGTCATGAAGAGGAAAGCCATGCCTTGTTGCAATTCAAGGAAGGCTTTGTTATTAGTAAGTTTGCTTCTTATAATCCTTTGAGTTATCCTAAAATAGCATCTTGGAATGCAACCACAGATTGCTGCTCATGGGTTGGCATTAAATGTGATGAGCACACAGGTCATGTGATTGGCATTGATCTTAGTAGCAGCCAGCTCCATGGTTCAATGGATGCTAATAGCAGTCTCTTTAGACTTGCACACCTTCAAATTCTTGATCTTGCTGATAATGACTTCAATCACTCTCAAATCCCATCCAGGATAGGTGAGCTTTCACAGCTAAGATACCTGAACCTTTCTCATACCAGATTTTTTGGAGAAATCCCACCACAAGTTTCACAGTTGTCCAAGTTGTTGTCTCTTGATCTAAGCAACAATGCTGAATCAAGTCCTACAGGTACAATCAATCTGTTGCAACTCAAAATGTCCAACCTGAGAAACATAGTTCAAAACACCACAAAACTTGAAATTCTTGTACTTTGTTATGTGTCTATTTCATTTCCTGTACCTGATGTGCTCACAAATCTAACATCTTTGCAAGCACTGTATCTTTACAACTGTGAGCTGTATGGTGAATTTCCAGTTGGAGTTTTTCATCTTCCAAACTTGAGATACCTGGATTTGGGATCTAATCCATATCTCACTGGTAGGTTGCCTGATTTTCAGTCCAATTCACTCAGCCTGTTACAACTTGATGGCACAAGTTTCTATGGTACACTACCAGCATCCATTGGAAAGCTTAGTTCTTTAAAAGCTCTATCAATTTCAAGTTGCAATTTTTTTGGGCCTATTCCTTCTTCACTTGGTAACCTCACACAACTCATGTATATAAACCTTGGATTGAACAAATTTAAGGGAGACCTCCCTGCATCATTTGCAAATCTTACCAAACTAAGCTACTTGTTGGTTGGTTTCAATGAATTCACTGTTGAGAGCATGTCTTGGATAGGAGAAATATCCCCATTCATATGCAATCTCAAATCACTCAAGCATCTTGATTTATCTTTCAACAACTTAAGAGGCAACATTCCTTCATGTTTGGGAAACTTTAGCCAATCTCTAGAAATTCTGATGCTAAAAGGAAACAAATTGTCTGGCCTCATTCCTCAAACATACATGACAAGAAATTCCCTGCAGATGATTGATTTCAGCAATAACAATCTGCAGGGTCAGTTGCCAAGAGCATTGGTCAATTGTGGAAGGCTAGAGTATCTTGATGTTAGCCATAACAATATCAATGATTCATTTCCATTCTGGCTGGGAGCTTTACCTGAGTTGAAGGTATTGGCTTTGCGGAACAATGAATTTTATGGAGCCATAAGGTGCCCCATGACCTGGACATGCACATTTCCCAAGCTTCACATCATTGATCTTTCTCACAATGAGTTCTCTGGAAATTTGGGTTTAGAAATGATCCAGGGATGGAAATCAATGAAAGCTTCCAACACAAGTCAATTACAGTATGAGCAATGGCATCTTTTCTTCCAGCAGAATGGACTATATTGGACTGAAACTAATACTTATTCTTTCACAATGTCTATCAAAGGGACGGTTATGGTCTATGAGAGGCTTCAAGAGTTTTACAACATGATAGCCATTGACATTTCAAGCAACAGAATCAGTGGAGAGATACCAGAAGTCATGGGAGACTTGAATGGTCTTGTTTTGCTCAACTTGTCCAATAACATGCTTACTGGCAGCATTCCATCCTCCTTAGGGAAGCTTTCAAACCTTGAAGCATTAGACCTTTCTCTAAACAGTCTGTCAGGGAACATTTCTCAACAGCTGACACAAATCACCTTTCTGGAGTTTTTTAATGTGTCCTTTAACAATCTCTCAGGTCCTATACCACAAAATAAGCAATTTGCTACATTTGAAGGTAATTCATTTGAGGGAAACAAAGGATTGTGTGGCAATCAGTTGTTGAAGAAGTGTGTAGATGATGCAGGGCCTTCATTTGTTCCACCTTCTGCCTCTGATGGTGACCAAGACACAGGATCTTTTCTTGAATTTGACTGGAAAATAGTTTTGATTGGGTATGGAGGTGGGCTTGTTGCAGGAGTGGCATTGGGAAGCACTTTCAGTCCACAGATACTTGGTTGGCTTAGAAAAAAAGGTCTTTTGAGTTGA 3060 0.4088 MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCESLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFAKLSYGESQMLDKAFYEEECHEEESHALLQFKEGFVISKFASYNPLSYPKIASWNATTDCCSWVGIKCDEHTGHVIGIDLSSSQLHGSMDANSSLFRLAHLQILDLADNDFNHSQIPSRIGELSQLRYLNLSHTRFFGEIPPQVSQLSKLLSLDLSNNAESSPTGTINLLQLKMSNLRNIVQNTTKLEILVLCYVSISFPVPDVLTNLTSLQALYLYNCELYGEFPVGVFHLPNLRYLDLGSNPYLTGRLPDFQSNSLSLLQLDGTSFYGTLPASIGKLSSLKALSISSCNFFGPIPSSLGNLTQLMYINLGLNKFKGDLPASFANLTKLSYLLVGFNEFTVESMSWIGEISPFICNLKSLKHLDLSFNNLRGNIPSCLGNFSQSLEILMLKGNKLSGLIPQTYMTRNSLQMIDFSNNNLQGQLPRALVNCGRLEYLDVSHNNINDSFPFWLGALPELKVLALRNNEFYGAIRCPMTWTCTFPKLHIIDLSHNEFSGNLGLEMIQGWKSMKASNTSQLQYEQWHLFFQQNGLYWTETNTYSFTMSIKGTVMVYERLQEFYNMIAIDISSNRISGEIPEVMGDLNGLVLLNLSNNMLTGSIPSSLGKLSNLEALDLSLNSLSGNISQQLTQITFLEFFNVSFNNLSGPIPQNKQFATFEGNSFEGNKGLCGNQLLKKCVDDAGPSFVPPSASDGDQDTGSFLEFDWKIVLIGYGGGLVAGVALGSTFSPQILGWLRKKGLLS. 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00652 1019 Gene3D ATP synthase (C/AC39) subunit, domain 3 14 128 IPR044911 -
Seca1g00652 1019 Gene3D Ribonuclease Inhibitor 626 960 IPR032675 -
Seca1g00652 1019 Gene3D Ribonuclease Inhibitor 444 625 IPR032675 -
Seca1g00652 1019 Gene3D Ribonuclease Inhibitor 301 424 IPR032675 -
Seca1g00652 1019 SUPERFAMILY L domain-like 332 542 - -
Seca1g00652 1019 Pfam Leucine Rich Repeat 638 660 IPR001611 GO:0005515
Seca1g00652 1019 Pfam Leucine Rich Repeat 512 537 IPR001611 GO:0005515
Seca1g00652 1019 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 679 777 - -
Seca1g00652 1019 Pfam Leucine rich repeat 663 722 IPR001611 GO:0005515
Seca1g00652 1019 Pfam Leucine rich repeat 559 617 IPR001611 GO:0005515
Seca1g00652 1019 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 832 955 - -
Seca1g00652 1019 PRINTS Leucine-rich repeat signature 639 652 - -
Seca1g00652 1019 PRINTS Leucine-rich repeat signature 885 898 - -
Seca1g00652 1019 FunFam Leucine-rich repeat receptor protein kinase EMS1 531 624 - -
Seca1g00652 1019 Pfam Leucine rich repeat N-terminal domain 300 347 IPR013210 -
Seca1g00652 1019 Pfam ATP synthase (C/AC39) subunit 16 305 IPR002843 GO:0046961
Seca1g00652 1019 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 627 956 IPR046956 -
Seca1g00652 1019 SMART LRR_typ_2 486 510 IPR003591 -
Seca1g00652 1019 SMART LRR_typ_2 861 885 IPR003591 -
Seca1g00652 1019 SMART LRR_typ_2 425 447 IPR003591 -
Seca1g00652 1019 SMART LRR_typ_2 376 401 IPR003591 -
Seca1g00652 1019 SMART LRR_typ_2 636 660 IPR003591 -
Seca1g00652 1019 FunFam V-type proton ATPase subunit 14 128 - -
Seca1g00652 1019 SUPERFAMILY V-type ATP synthase subunit C 14 311 IPR036079 -
Seca1g00652 1019 SUPERFAMILY L domain-like 834 943 - -
Seca1g00652 1019 SUPERFAMILY L domain-like 452 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00652 Seca-Chr1 8088322 8107006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00652 1 340 Primary Pumps ATPases(2) AT3G28710 85.882 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00652 K02146 - cam:101493367 655.595