Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00646 ATGGAGGCTATGTCAAAAATTTCTAGTCCTAGTGGTCCAGAGATAGAAGAGAAGAGAGTTACTTCCATTTCCCATGAAGATGATTTCTGTGCTCAAGAGGGTAGAAAGGAAGAAACACTCAATTCTGCTAAAACTGAGATGGGTGAGGTGAAAGAAGAAAATGAGAGATTGAAGATGATGTTGGAACGAGTAGAAAAAGATTACCACTCCCTTCAACTTCGTTTCTTTGACATCCTTCACAAAGAAGTTTCTAAGAAAGGTGTTGCTGATGATTCATCTACTTCCCATGATGATACTGAAGAGCCTGAACTTGTGTCACTTTGCCTTGGAAGAAGTCCAAAGGAGTCTAAAAAGGAAGCAAGAATTGGAAACTCCAACAAACTTTATGAAGAAAAAGAAGATCAAGAAGTCAACCTTACTCTTGGATTAGACTCCAAATATATGTTGTCAATGGAGCTTGTGCCTGATTTGAGTCCCATGAACAGCTCAGAAGAACCAAAGGAAGCAGAAGCAGAAGGAGAAAGAACTTTGTCAACAAATAAACCAGTAAAAGTTATAAATGTAAATGATGACATTACAGATCATATTCCTGCCAAGAGAGCCAGGGTATCTGTGAGAGCTAGATGTGACACTCCCACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCACCATCATGTCCAGTTAGGAAACAGGTGCAAAGATGTGCTGAGGACTTGTCCATCTTAATCACTACATATGAAGGAACTCACAACCACCCACTTCCAGTGTCAGCCACAGCTATGGCTTCCACAACTTCTGCAGCTGCTTCAATGTTGTTGTCAGGTTCTTCAACATCTCAACCTTCAAGTCACAATTCTGCATCTTTTGGAAATACTCCCAGTCCCACAATACACAATGGTCTGAGTTTCAGTCATCAATTTGATGAATCAAGAGCAAAACAGGTCTTCTTACCACCAAACCATGCCTCATCACATTTGTTCCCAACAGTAACTCTAGACCTCACTTCTTCCTCATCCACTTCATCAACTCATGTCAACCGTTTACCTTCAAGCCAAAGATTTTCTCCCACTAGTCTTAACTTCTGTCCCCCAGAGCCCAACTTCACACCATCAATTTGGGGTAAGGGATTCCCTAACAATGGCACAATGCCAATTGAAAAAGCCCAAATTAGGCCAATTATGCAGGGGAACCATTTCCAAGAACAATTCTATCAACAACAATGCATGACAAACCAAACTCCTTCTAGGGAGGCTTTGGCTGAAACAATAACCAAAGCAATCAGCACAGATCCAAGCCTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGGACAAGGATCAACAAGTGGGAACCAAGAAGGAGGAGAGAATAATGTTTTAGGTTCAGGGTTGAATTTGAAACTTGGGGAGCATCCTCATCAATTGGTTTCATCTAATAATATGTTGAATCAGAATGGGAAAGGATGCTACTACAAAAGATTGTCCTCTACAAGTTCTCAAGGCAGAAACTTCATGCTTCTCCAACCCACATTGCCATTTTCTTTATCCAAGAATAGCACAAACACACCTTCTTCCATTGTTAATCAGATTAACCCTTATGATCCAGATGTGAACATACATCATTAG 1692 0.4078 MEAMSKISSPSGPEIEEKRVTSISHEDDFCAQEGRKEETLNSAKTEMGEVKEENERLKMMLERVEKDYHSLQLRFFDILHKEVSKKGVADDSSTSHDDTEEPELVSLCLGRSPKESKKEARIGNSNKLYEEKEDQEVNLTLGLDSKYMLSMELVPDLSPMNSSEEPKEAEAEGERTLSTNKPVKVINVNDDITDHIPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSQPSSHNSASFGNTPSPTIHNGLSFSHQFDESRAKQVFLPPNHASSHLFPTVTLDLTSSSSTSSTHVNRLPSSQRFSPTSLNFCPPEPNFTPSIWGKGFPNNGTMPIEKAQIRPIMQGNHFQEQFYQQQCMTNQTPSREALAETITKAISTDPSLRSVIAAAVSSIVGQGSTSGNQEGGENNVLGSGLNLKLGEHPHQLVSSNNMLNQNGKGCYYKRLSSTSSQGRNFMLLQPTLPFSLSKNSTNTPSSIVNQINPYDPDVNIHH. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00646 563 SMART WRKY_cls 214 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00646 563 MobiDBLite consensus disorder prediction 156 176 - -
Seca1g00646 563 MobiDBLite consensus disorder prediction 1 52 - -
Seca1g00646 563 Coils Coil 40 74 - -
Seca1g00646 563 MobiDBLite consensus disorder prediction 292 322 - -
Seca1g00646 563 MobiDBLite consensus disorder prediction 18 52 - -
Seca1g00646 563 MobiDBLite consensus disorder prediction 358 381 - -
Seca1g00646 563 Pfam WRKY DNA -binding domain 215 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00646 563 FunFam probable WRKY transcription factor 31 199 276 - -
Seca1g00646 563 ProSiteProfiles WRKY domain profile. 209 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00646 563 Gene3D WRKY domain 199 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00646 563 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 27 476 IPR044810 GO:0003700
Seca1g00646 563 SUPERFAMILY WRKY DNA-binding domain 207 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00646 Seca-Chr1 7985194 7988526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00646 47 540 WRKY Transcription Factor Family AT5G15130 41.788 1.04e-88 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g00646 WRKY 4.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00646 - - gmx:100792084 676.011