Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00640 ATGGAAGAAGAAGGTTTGGACAATTCTAAAAGGGGGTCTTCTATGTGTAGTGACGATGAGACAGAGGACCTTTCTGACACATCATGTAGTCATACTAATGAAGATAGTAGTTCCACAAGTGAAGATGATGTAGAAGACACGAATGAAAATAGGTTTGAGGATGAAGAGGTGGATCAATATAGGATTGATGGGATATTGGACATGGCTAAAGTGGACTTCACAAAATTAGGTTATGAAGAAATGAAGTTGTATCATTTTAAAGATCTAGAGGCGGCATATGAATTTTACAATTTCTATGCACATAAGAGGGGATTTACTGCTCGAAAATGGAATGTGGTAAAGAATAAGGAAGGATTAAGAACACAACAAACGTTTGTGTGTTTCAAGGAGGGGTATCGCTTAGAAAAACACTTGAAGAAGGAAAATCCGAAGAGGGAGGCAAGACCTATTACGAGGTGTGGGTGTTATGCTTATTTTCGTGTTCGTTTCTGTCGGGACACAGGTCGTTGGGAAGTGAAGAAATTTAAAGATGAGCATACTCCTAAGAAGTTTGCGTCAATGTTGCCTGCTCATAGGACGATGAACGAAACAGACAAAATGCAAATGCATACCATGAGGGATGCCGGTATTGGTGTTAGTCAAATATATGGTTTAGCTGCAAAACAGTCAGGGGGGTATGAAATGGTGGGATACAGGAAACGAGATATGTACAATGAAATTGTGAAACAGAGGCGGTTGCAAGTTAATGATGTAAGAGCAGCTTTTTCTTATCTTAAAGGATTGCGAGCTATTGATAGTGATATGTACTGGGCTCACACCTTAGATGGAGAAGGAAGGTTGAAACATTTGTTTTGGTGTGATGGGAGGAGTCAAAGTGATTATAATATCTTTGGTGATGTAGTTGCCTTTGATGCAACATATCATCGTAACAAGTATATGTCACCATTAGTAGTGTTTGCTGGTGTCAATCACCATAATCAAACAATTGTTTTTGGTAGTGCATTGGTTGCAAATGAAACAGAGGAGACATATGTCTGGTTACTGAAGCAGTTTCTTTGTGTAATGAAGGGTAAGATTCCTGTGTCAGTTATAAATGATGGCGACATTGCTATGAGGAATGCAATAAAGATTGTTTTTCCTTCTTCACGACACAGGTTATGTGCTTGGCATTTGTTACGCAATGCAACAAGCAATGTAAGTAATCCAAGGTTCACTAAAAAGTTCAGAAAGTTCATGCTTGGTGACTATGAGGTTGCGTGTTTTCGTAAAAAATGGGATGACCTTGTTGCTGAATTTGATTTGCAGGGTCACTCATGGGTGACAGAGCTTTATGAAAAGAGGAAAATGTGGGCCACTGCTCATATTCGTGGTAATGTTTTTGCTGGTTTTCGAACTACCTCACGGTGTGAGGGACTCCATAGTCAGGTTGGAAGATATGTGCATTACAGGAATAACTTAACTGAGTTCCTTCGCCATTTCACTCATTATTTGTCATACACTAGGCAACGGGAACTAGAGGCTGACTTTGATTCCATTGTTGGTGATCCTGTTTTACAAACACCGTTTGAAGATATAGAGAGGTGTGTTGCGAAGGTTTATACAAGGAAGATATTTTTTAAATTCAGAACTGTTTTGAAGAGGGTAAGCAAGTATATGGTTTCAGGTTGTGAACGCACCCCTAACTGTCCCATATATATTTTCTGTTATAGATCTTACACTGGTCGTGAGTGGCATGTATCTTATGCTTCACAAAATTTAGAAGTGAAGTGTTCTTGTATGCGGATGGAGTCAATGGGAATTCCATGTGAACACATACTTGCGCTTTTGCATTACTTGGACATCAATGAGTTACCGGAATCGGTAGTATTGCAAAGGTGGACAAAGTATGCCAAACATTATGGTGATAGTTGTGAGGTGGAGGGTACAAACATGTTAGGGTCAATGGGGAAGAACCGAGTCATGGCACTTCTATTTGATTGTTACGAAATGTGTAGGTTGGCTGGTAAAACTGTTAACAATTATGAGTCAACCAGAACACTGATTAGGAACCATATGCTTACCTTAAAGGAAGCCACAATGTCTGATGCAAGGGGAGAAGGATTTGATGAAGACGATGAAGATTTTAATGTGAAGGACCCTGCAAGAGTAAGGACCAAAGGTTGTGGATCTTCACAGTTGCCCTCTGGACAAAGAGGCAGGAAGAGGACAAATTGTTGCAGTGTCTGTCAAAGTCGAGGGCATAACAAGAAGACATGCCCAGTTCGTCGATCCAATGAAGCTAATGGAACAGGTGGAGCAACATGCAGCACACAACCTGTGGAAGGGTAA 2328 0.4029 MEEEGLDNSKRGSSMCSDDETEDLSDTSCSHTNEDSSSTSEDDVEDTNENRFEDEEVDQYRIDGILDMAKVDFTKLGYEEMKLYHFKDLEAAYEFYNFYAHKRGFTARKWNVVKNKEGLRTQQTFVCFKEGYRLEKHLKKENPKREARPITRCGCYAYFRVRFCRDTGRWEVKKFKDEHTPKKFASMLPAHRTMNETDKMQMHTMRDAGIGVSQIYGLAAKQSGGYEMVGYRKRDMYNEIVKQRRLQVNDVRAAFSYLKGLRAIDSDMYWAHTLDGEGRLKHLFWCDGRSQSDYNIFGDVVAFDATYHRNKYMSPLVVFAGVNHHNQTIVFGSALVANETEETYVWLLKQFLCVMKGKIPVSVINDGDIAMRNAIKIVFPSSRHRLCAWHLLRNATSNVSNPRFTKKFRKFMLGDYEVACFRKKWDDLVAEFDLQGHSWVTELYEKRKMWATAHIRGNVFAGFRTTSRCEGLHSQVGRYVHYRNNLTEFLRHFTHYLSYTRQRELEADFDSIVGDPVLQTPFEDIERCVAKVYTRKIFFKFRTVLKRVSKYMVSGCERTPNCPIYIFCYRSYTGREWHVSYASQNLEVKCSCMRMESMGIPCEHILALLHYLDINELPESVVLQRWTKYAKHYGDSCEVEGTNMLGSMGKNRVMALLFDCYEMCRLAGKTVNNYESTRTLIRNHMLTLKEATMSDARGEGFDEDDEDFNVKDPARVRTKGCGSSQLPSGQRGRKRTNCCSVCQSRGHNKKTCPVRRSNEANGTGGATCSTQPVEG. 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00640 775 MobiDBLite consensus disorder prediction 755 775 - -
Seca1g00640 775 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
Seca1g00640 775 PANTHER OS01G0519700 PROTEIN 84 751 - -
Seca1g00640 775 MobiDBLite consensus disorder prediction 746 775 - -
Seca1g00640 775 MobiDBLite consensus disorder prediction 39 53 - -
Seca1g00640 775 MobiDBLite consensus disorder prediction 1 54 - -
Seca1g00640 775 SMART 26again6 588 615 IPR006564 GO:0008270
Seca1g00640 775 ProSiteProfiles Zinc finger SWIM-type profile. 577 613 IPR007527 GO:0008270
Seca1g00640 775 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g00640 775 Pfam MULE transposase domain 300 394 IPR018289 -
Seca1g00640 775 Pfam SWIM zinc finger 583 612 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00640 Seca-Chr1 7937612 7941184 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g00640 MULE 3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00640 - - tpra:123913749 685.256