Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g00634 | ATGGCTTTAGCAATTCCCAATTATATGGTGTTAGAAGCATGGTGCATTGTACTTGTTATTATCTCTTGGGCTAGTTTCTGCACTGCAATTAAATCTGAATCATCACCACTAGACATAGAAGCAAAAGCTCTTCTAGAAAGTGAGTGGTGGAGTGACTACACTAACCATGTTCCAAGTCGTTGTCAGTGGCCAGGTATTACATGTAATGATGATGGAAGCATTACAAACATTACTTTGCCAGCTGAAATTCAATTGGGAGACAAGTTCAGAAGGTTCAACTTCTCTTCTTTTCCAAACCTTGTTCACCTCAATCTTGCTTCACATGGACTCACTGGGAGCATCCCTTATGAACTAGGTACCCTTTCCAAACTTATTTATCTTGACCTCTCTTCTAATGATATTCAGGGTCTCATACCATCAAATATTTGGAATCTAAGGAATCTGGTGACACTGAATCTGGCTAGAAACAGGCTTAATGGTTCAATTCCATCTTCTGTTGGTCAGTTGACTAAGTTGACCTCTCTGTTTCTTGATACCAACATGTTAAGTGGGTCTATTCCTCCAGAGTTAGGAAAGCTCAAAAATCTGATTCATTTGGGTCTGAATAATAATAGTTTTATTGGTCAAATACCTGTGGAGATTGGTCTATTGAACAGTTTGAGATATCTGTCTCTCAGTGTCAACAAGTTGAATGGTTTTATACCTTTAGAAATAAGGAATTTGAAGAACCTTATTTTTCTGGATCTTAATACTAACAATCTCACTGGTGAGATACTTTCAGTTTTGCATAATCTTACCAATTTGACTGAACTAAACTTGGCCAACAATGAGATTTCTGGTATGGTCCCAAGTGAGCTTACCCAATTGACCCAACTTGAGCATCTGAATATTTCAGATAACAAAATTTTTGGTGCAATACCTCCTGAGATTGGGAAATTGTCCAAACTCAAGATTCTAGACCTTTCTAGAAACGTGTTGACTGGAGATATCCCTGTCAGTCTTTCAACTTGCTCTAACCTACAGGTGTTGAGTTTGAGCTATAACAATATAACAGGAAGCATTCCCTCTCACATTGGTGATCTTGCTAAACTTGATTTAATTGATTTGAGTCATAACTCAATCAGTGGAGAAATACCTTACCAACTAGGGAATGTGAAATACACAAGGGTCTTGGATCTCAGTTATAATCAACTCACTGGAACCATTCCCAGTTCCTTAGTATTACTGAGGAGGATAAACTTGTCCTACAATTCTCTAGAAGGTAAGATCCCAGTTAGTCTCCAAAATTCTTTTGCATCTGATGCATTCATTGGCAATGACCATTTATGTGGCCAAATCAGATCCTTTCCTACTCATTGCTCCTCTTTTGCTAGAACAAATAATAGAGTCAGGACACATATGAAGATTTTCCTTCCTCTCACAGCTTTTCTTGCTCTTCTATGCTCTTTGTATTTGTTCCTCCGCTGGCATAATGCTAGGAATTCCAATTCAGAAACAAAAGCAATAAAGAATGGTGACTTGTTCTCAATATGGAACTATGATGGTAAAATTGCATATGAAGACATAATTGAAGCAACAGAAGGTTTTAGCATCAAATACTGCATAGGAACTGGTGGATATGGTAGTGTCTACAAAGCAAAGCTACCAAGTGGTAGAATAGTGGCCTTAAAGAAACTCCACAATTTAGAGGCCAATGAACCAGAAATCCGTAGGATTTTCAAGAATGAAGTGAGAATGTTGACACAGATAAGGCATAGAAATATTGTGAAGCTTTATGGATTCTGTTTGCACAACAGATGCATGTTTCTGGTTTTGGAATACATGGAAAGGGGAAGCTTATATTATGCTCTACACAATGACATTGAAGCTGTGGAATTAGATTGGACCAAAAGGATTAACATTGTGAAAAGCATAGCACATAGCTTATCATACCTTCATTATGATTGTAAGCCAGCAATTATTCATAGAGATGTAACAACCAAGAATGTTCTCTTGAATTCAGAAATGGAGGCTTGTCTTTCTGACTTTGGCATAGCAAGGCTTCTAAATTCTAGTTCCACCATTCGAACAGTACTTGCTGGTACTTACGGGTATATTGCACCAGAACTTGCCTATACTGATTCTGTGACTGAGAAATGTGATGTCTACAGCTTTGGAGTGGTTGCACTTGAAATCATAATGGGAAAACATCCTGGAGAACTTGTTTCTTCATTAACATCAGAATCCACTCAAAACATTCTCTTTAAAGATATATTAGACAAGAGACTAATATCTACCACTACCATCAATCAACAATCTGCTCAGAGTTTAGTTCTTGTAGCAACAGTAGCCTTTGCATGTGTTCAATCTCTGCCAATTTGTAGGCCAACAATGCAAGCAGTGGTTGACTTACTTGTCACAGGGAAGCCCCGATTAAGCAAACCTTTTGAGGCAATTTCTATTAGTCAGGTGGTAAATCATGAATTGTAA | 2469 | 0.3783 | MALAIPNYMVLEAWCIVLVIISWASFCTAIKSESSPLDIEAKALLESEWWSDYTNHVPSRCQWPGITCNDDGSITNITLPAEIQLGDKFRRFNFSSFPNLVHLNLASHGLTGSIPYELGTLSKLIYLDLSSNDIQGLIPSNIWNLRNLVTLNLARNRLNGSIPSSVGQLTKLTSLFLDTNMLSGSIPPELGKLKNLIHLGLNNNSFIGQIPVEIGLLNSLRYLSLSVNKLNGFIPLEIRNLKNLIFLDLNTNNLTGEILSVLHNLTNLTELNLANNEISGMVPSELTQLTQLEHLNISDNKIFGAIPPEIGKLSKLKILDLSRNVLTGDIPVSLSTCSNLQVLSLSYNNITGSIPSHIGDLAKLDLIDLSHNSISGEIPYQLGNVKYTRVLDLSYNQLTGTIPSSLVLLRRINLSYNSLEGKIPVSLQNSFASDAFIGNDHLCGQIRSFPTHCSSFARTNNRVRTHMKIFLPLTAFLALLCSLYLFLRWHNARNSNSETKAIKNGDLFSIWNYDGKIAYEDIIEATEGFSIKYCIGTGGYGSVYKAKLPSGRIVALKKLHNLEANEPEIRRIFKNEVRMLTQIRHRNIVKLYGFCLHNRCMFLVLEYMERGSLYYALHNDIEAVELDWTKRINIVKSIAHSLSYLHYDCKPAIIHRDVTTKNVLLNSEMEACLSDFGIARLLNSSSTIRTVLAGTYGYIAPELAYTDSVTEKCDVYSFGVVALEIIMGKHPGELVSSLTSESTQNILFKDILDKRLISTTTINQQSAQSLVLVATVAFACVQSLPICRPTMQAVVDLLVTGKPRLSKPFEAISISQVVNHEL. | 823 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g00634 | 822 | SUPERFAMILY | RNI-like | 93 | 433 | - | - | |
Seca1g00634 | 822 | ProSiteProfiles | Protein kinase domain profile. | 529 | 805 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g00634 | 822 | Gene3D | Ribonuclease Inhibitor | 213 | 454 | IPR032675 | - | |
Seca1g00634 | 822 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 653 | 665 | IPR008266 | GO:0004672|GO:0006468 | |
Seca1g00634 | 822 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 221 | 456 | - | - | |
Seca1g00634 | 822 | ProSiteProfiles | Leucine-rich repeat profile. | 339 | 361 | IPR001611 | GO:0005515 | |
Seca1g00634 | 822 | Gene3D | Ribonuclease Inhibitor | 146 | 212 | IPR032675 | - | |
Seca1g00634 | 822 | Gene3D | Ribonuclease Inhibitor | 37 | 145 | IPR032675 | - | |
Seca1g00634 | 822 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 219 | 799 | - | - | |
Seca1g00634 | 822 | Gene3D | Phosphorylase Kinase; domain 1 | 490 | 607 | - | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 265 | 288 | IPR003591 | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 338 | 361 | IPR003591 | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 169 | 193 | IPR003591 | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 121 | 144 | IPR003591 | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 217 | 241 | IPR003591 | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 145 | 168 | IPR003591 | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 289 | 312 | IPR003591 | - | |
Seca1g00634 | 822 | SMART | LRR_typ_2 | 313 | 337 | IPR003591 | - | |
Seca1g00634 | 822 | PRINTS | Leucine-rich repeat signature | 124 | 137 | - | - | |
Seca1g00634 | 822 | PRINTS | Leucine-rich repeat signature | 313 | 326 | - | - | |
Seca1g00634 | 822 | Pfam | Leucine rich repeat | 98 | 158 | IPR001611 | GO:0005515 | |
Seca1g00634 | 822 | Pfam | Leucine rich repeat | 315 | 374 | IPR001611 | GO:0005515 | |
Seca1g00634 | 822 | Pfam | Leucine rich repeat | 247 | 302 | IPR001611 | GO:0005515 | |
Seca1g00634 | 822 | Pfam | Leucine Rich Repeat | 409 | 429 | IPR001611 | GO:0005515 | |
Seca1g00634 | 822 | ProSitePatterns | Protein kinases ATP-binding region signature. | 535 | 557 | IPR017441 | GO:0005524 | |
Seca1g00634 | 822 | Gene3D | Transferase(Phosphotransferase) domain 1 | 608 | 807 | - | - | |
Seca1g00634 | 822 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 492 | 607 | - | - | |
Seca1g00634 | 822 | Pfam | Protein kinase domain | 532 | 794 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g00634 | 822 | FunFam | Leucine-rich repeat receptor-like protein kinase | 608 | 807 | - | - | |
Seca1g00634 | 822 | FunFam | Nuclear pore complex protein NUP107 | 27 | 188 | - | - | |
Seca1g00634 | 822 | SUPERFAMILY | Protein kinase-like (PK-like) | 511 | 798 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g00634 | Seca-Chr1 | 7830422 | 7833315 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g00634 | 96 | 701 | Receptor kinase-like Gene Family | AT4G08850 | 37.762 | 6.53e-137 | 430 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca1g00634 | Pkinase | 5.5e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g00634 | - | - | aprc:113863342 | 1171.76 |