Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00634 ATGGCTTTAGCAATTCCCAATTATATGGTGTTAGAAGCATGGTGCATTGTACTTGTTATTATCTCTTGGGCTAGTTTCTGCACTGCAATTAAATCTGAATCATCACCACTAGACATAGAAGCAAAAGCTCTTCTAGAAAGTGAGTGGTGGAGTGACTACACTAACCATGTTCCAAGTCGTTGTCAGTGGCCAGGTATTACATGTAATGATGATGGAAGCATTACAAACATTACTTTGCCAGCTGAAATTCAATTGGGAGACAAGTTCAGAAGGTTCAACTTCTCTTCTTTTCCAAACCTTGTTCACCTCAATCTTGCTTCACATGGACTCACTGGGAGCATCCCTTATGAACTAGGTACCCTTTCCAAACTTATTTATCTTGACCTCTCTTCTAATGATATTCAGGGTCTCATACCATCAAATATTTGGAATCTAAGGAATCTGGTGACACTGAATCTGGCTAGAAACAGGCTTAATGGTTCAATTCCATCTTCTGTTGGTCAGTTGACTAAGTTGACCTCTCTGTTTCTTGATACCAACATGTTAAGTGGGTCTATTCCTCCAGAGTTAGGAAAGCTCAAAAATCTGATTCATTTGGGTCTGAATAATAATAGTTTTATTGGTCAAATACCTGTGGAGATTGGTCTATTGAACAGTTTGAGATATCTGTCTCTCAGTGTCAACAAGTTGAATGGTTTTATACCTTTAGAAATAAGGAATTTGAAGAACCTTATTTTTCTGGATCTTAATACTAACAATCTCACTGGTGAGATACTTTCAGTTTTGCATAATCTTACCAATTTGACTGAACTAAACTTGGCCAACAATGAGATTTCTGGTATGGTCCCAAGTGAGCTTACCCAATTGACCCAACTTGAGCATCTGAATATTTCAGATAACAAAATTTTTGGTGCAATACCTCCTGAGATTGGGAAATTGTCCAAACTCAAGATTCTAGACCTTTCTAGAAACGTGTTGACTGGAGATATCCCTGTCAGTCTTTCAACTTGCTCTAACCTACAGGTGTTGAGTTTGAGCTATAACAATATAACAGGAAGCATTCCCTCTCACATTGGTGATCTTGCTAAACTTGATTTAATTGATTTGAGTCATAACTCAATCAGTGGAGAAATACCTTACCAACTAGGGAATGTGAAATACACAAGGGTCTTGGATCTCAGTTATAATCAACTCACTGGAACCATTCCCAGTTCCTTAGTATTACTGAGGAGGATAAACTTGTCCTACAATTCTCTAGAAGGTAAGATCCCAGTTAGTCTCCAAAATTCTTTTGCATCTGATGCATTCATTGGCAATGACCATTTATGTGGCCAAATCAGATCCTTTCCTACTCATTGCTCCTCTTTTGCTAGAACAAATAATAGAGTCAGGACACATATGAAGATTTTCCTTCCTCTCACAGCTTTTCTTGCTCTTCTATGCTCTTTGTATTTGTTCCTCCGCTGGCATAATGCTAGGAATTCCAATTCAGAAACAAAAGCAATAAAGAATGGTGACTTGTTCTCAATATGGAACTATGATGGTAAAATTGCATATGAAGACATAATTGAAGCAACAGAAGGTTTTAGCATCAAATACTGCATAGGAACTGGTGGATATGGTAGTGTCTACAAAGCAAAGCTACCAAGTGGTAGAATAGTGGCCTTAAAGAAACTCCACAATTTAGAGGCCAATGAACCAGAAATCCGTAGGATTTTCAAGAATGAAGTGAGAATGTTGACACAGATAAGGCATAGAAATATTGTGAAGCTTTATGGATTCTGTTTGCACAACAGATGCATGTTTCTGGTTTTGGAATACATGGAAAGGGGAAGCTTATATTATGCTCTACACAATGACATTGAAGCTGTGGAATTAGATTGGACCAAAAGGATTAACATTGTGAAAAGCATAGCACATAGCTTATCATACCTTCATTATGATTGTAAGCCAGCAATTATTCATAGAGATGTAACAACCAAGAATGTTCTCTTGAATTCAGAAATGGAGGCTTGTCTTTCTGACTTTGGCATAGCAAGGCTTCTAAATTCTAGTTCCACCATTCGAACAGTACTTGCTGGTACTTACGGGTATATTGCACCAGAACTTGCCTATACTGATTCTGTGACTGAGAAATGTGATGTCTACAGCTTTGGAGTGGTTGCACTTGAAATCATAATGGGAAAACATCCTGGAGAACTTGTTTCTTCATTAACATCAGAATCCACTCAAAACATTCTCTTTAAAGATATATTAGACAAGAGACTAATATCTACCACTACCATCAATCAACAATCTGCTCAGAGTTTAGTTCTTGTAGCAACAGTAGCCTTTGCATGTGTTCAATCTCTGCCAATTTGTAGGCCAACAATGCAAGCAGTGGTTGACTTACTTGTCACAGGGAAGCCCCGATTAAGCAAACCTTTTGAGGCAATTTCTATTAGTCAGGTGGTAAATCATGAATTGTAA 2469 0.3783 MALAIPNYMVLEAWCIVLVIISWASFCTAIKSESSPLDIEAKALLESEWWSDYTNHVPSRCQWPGITCNDDGSITNITLPAEIQLGDKFRRFNFSSFPNLVHLNLASHGLTGSIPYELGTLSKLIYLDLSSNDIQGLIPSNIWNLRNLVTLNLARNRLNGSIPSSVGQLTKLTSLFLDTNMLSGSIPPELGKLKNLIHLGLNNNSFIGQIPVEIGLLNSLRYLSLSVNKLNGFIPLEIRNLKNLIFLDLNTNNLTGEILSVLHNLTNLTELNLANNEISGMVPSELTQLTQLEHLNISDNKIFGAIPPEIGKLSKLKILDLSRNVLTGDIPVSLSTCSNLQVLSLSYNNITGSIPSHIGDLAKLDLIDLSHNSISGEIPYQLGNVKYTRVLDLSYNQLTGTIPSSLVLLRRINLSYNSLEGKIPVSLQNSFASDAFIGNDHLCGQIRSFPTHCSSFARTNNRVRTHMKIFLPLTAFLALLCSLYLFLRWHNARNSNSETKAIKNGDLFSIWNYDGKIAYEDIIEATEGFSIKYCIGTGGYGSVYKAKLPSGRIVALKKLHNLEANEPEIRRIFKNEVRMLTQIRHRNIVKLYGFCLHNRCMFLVLEYMERGSLYYALHNDIEAVELDWTKRINIVKSIAHSLSYLHYDCKPAIIHRDVTTKNVLLNSEMEACLSDFGIARLLNSSSTIRTVLAGTYGYIAPELAYTDSVTEKCDVYSFGVVALEIIMGKHPGELVSSLTSESTQNILFKDILDKRLISTTTINQQSAQSLVLVATVAFACVQSLPICRPTMQAVVDLLVTGKPRLSKPFEAISISQVVNHEL. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00634 822 SUPERFAMILY RNI-like 93 433 - -
Seca1g00634 822 ProSiteProfiles Protein kinase domain profile. 529 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00634 822 Gene3D Ribonuclease Inhibitor 213 454 IPR032675 -
Seca1g00634 822 ProSitePatterns Tyrosine protein kinases specific active-site signature. 653 665 IPR008266 GO:0004672|GO:0006468
Seca1g00634 822 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 221 456 - -
Seca1g00634 822 ProSiteProfiles Leucine-rich repeat profile. 339 361 IPR001611 GO:0005515
Seca1g00634 822 Gene3D Ribonuclease Inhibitor 146 212 IPR032675 -
Seca1g00634 822 Gene3D Ribonuclease Inhibitor 37 145 IPR032675 -
Seca1g00634 822 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 219 799 - -
Seca1g00634 822 Gene3D Phosphorylase Kinase; domain 1 490 607 - -
Seca1g00634 822 SMART LRR_typ_2 265 288 IPR003591 -
Seca1g00634 822 SMART LRR_typ_2 338 361 IPR003591 -
Seca1g00634 822 SMART LRR_typ_2 169 193 IPR003591 -
Seca1g00634 822 SMART LRR_typ_2 121 144 IPR003591 -
Seca1g00634 822 SMART LRR_typ_2 217 241 IPR003591 -
Seca1g00634 822 SMART LRR_typ_2 145 168 IPR003591 -
Seca1g00634 822 SMART LRR_typ_2 289 312 IPR003591 -
Seca1g00634 822 SMART LRR_typ_2 313 337 IPR003591 -
Seca1g00634 822 PRINTS Leucine-rich repeat signature 124 137 - -
Seca1g00634 822 PRINTS Leucine-rich repeat signature 313 326 - -
Seca1g00634 822 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Seca1g00634 822 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Seca1g00634 822 Pfam Leucine rich repeat 247 302 IPR001611 GO:0005515
Seca1g00634 822 Pfam Leucine Rich Repeat 409 429 IPR001611 GO:0005515
Seca1g00634 822 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Seca1g00634 822 Gene3D Transferase(Phosphotransferase) domain 1 608 807 - -
Seca1g00634 822 FunFam Leucine-rich repeat receptor protein kinase MSP1 492 607 - -
Seca1g00634 822 Pfam Protein kinase domain 532 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00634 822 FunFam Leucine-rich repeat receptor-like protein kinase 608 807 - -
Seca1g00634 822 FunFam Nuclear pore complex protein NUP107 27 188 - -
Seca1g00634 822 SUPERFAMILY Protein kinase-like (PK-like) 511 798 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00634 Seca-Chr1 7830422 7833315 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00634 96 701 Receptor kinase-like Gene Family AT4G08850 37.762 6.53e-137 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00634 Pkinase 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00634 - - aprc:113863342 1171.76