Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00629 ATGGGCATGGGGAGTAGTCAATCACAGCTTCAATTGGATTTGGAAGCTAATGCTTTACTCAACAGTGGATGGTGGGACACGTCTCTTCCATACTACAATGTCTCCCGTCCATGTCAGTGGTACGGTATAGTTTGCAACAAGGCAAGAAGCATAACAGAAATATCCTATGGGGGATACGGCTATGATAAAGTAGTTCAATTTGCAACACTCAACCTCTCTGCTTTCCCGAATTTAGAAAAGCTTACTGTCAGTGAAACAGGACTACAAGGGACCATCCCATCAGAAATAGGTACTCTCACCAAACTCACTTATCTCCATTTGACAAGCAATTATCTTGAAGGTGAGATACCTCCTTCAATTGGAAATCTTAGCCTATTACAGAACCTTAACATCTCTAACAACCACATCCAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGCCTATTACAGAGCCTTCACATCTCTATGAACGACATTCAAGGCTCCATTCCTCATGAGTTGGGCTTCTTGAAAAATCTCAATACATTAGATCTGTCTAGAAACAACATTCAAGGCTCCATTCCTCGTGAGTTGGGGTTCCTAAAAAATCTTACTGCATTAGATCTATCTGGTAACAGAATCAATGGAACCTTGCCAATTTCACTTGACATTTCCAACAATCTTCTTGTTGGTTCCCTCCCTTCACAACTAAGATATTTGCCAAACTTAACCCATTTGGATCTGAGCCACAATGAACTCACTGGACCGGTTCCCCAGTATATCCATGCCTCTTTTGTGGATTTTTCCTACAATAATTTGAAAGGTCCCATTCCAGATGGTTTCGATCATTATGGCGCCCTAATAGGCAATAAGAATGTTTGTAGCGACATTCCATATCAGCAACTCCATTACCAATTCAAACCTTGTTCAGCAAGCAGCAAGACAACCACCAAACTAATACTTGCCACAGTTCTTTTCGTCTATATTTATCTAATCCTAGCCTCCTCACTACGCATGTACTGTTTGAAGCTTCATTGCAAAGAAATTAAGAACAAACATGCAGAATCAACAACCACTGAGGACTTTGACATGAAATACTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCTAGTGGCAAGGTTGTTGCCTTAAAGAAACTCCATGGTTTTGAAGCAGAGGTGCCAGCTTTGGATGAGAGTTTTAGGAATGAAGTGAGGGTATTATCAGAAATAAAGCATCGACACATTGTCAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTAATCTATCAATACATGGAGAAAGAAGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTAACATTGTTAAAGGCATTGCACATGCTTTGTCATATCTTCATCATGATTGCAACCCTCCAATAGTACATAGAGACATAGCTACCACAAATATCTTGCTTAACTCTGAGTGGCAGCCTAGTGTTGCTGACTTTGGCACAGCCAGACTCCTCAAACATGATTCATCAAATCAAACTATAGTTGCTGGAACCATTGGGTATATAGCTCCAGAGCTAGCCTATACAATGGTTGTGAGTGAAAAGTGTGATGTCTACAGCTTCGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGGCATCCTAAGGAAATATTGTCATCAATTCAATCACCATGTGCTCAAGGCATCAAATTATGGGAAATATTAGACCAACGCCTTCCACTACCAAATATGTCAGTTTCACTTGACATAGTTCGGGTTGCAATAGTAGCATTTGCATGTTTAAATCTCAATCCTTGCTCTCGACCGACAATGAAGTATGTGTCTCAATGTTTTCGTACTCCCATAACATCATCAACCATTCCTTCACTTGAAATTTCATTGCAGCAGCTCATGAGAATGCAGTTTGTTTTTATTTCTAATTTCAATGTCTTTCTTCTTCTTTTTATTTGTGGTGTGATGATTCAATCTCCATCTGCTACACCATCACAGCTTCAATTGGATTTAGAAGCTAATGCTTTACTCAACAGTCGATGGTGGGATTCTGACTTCAATATCTCAGATCGCTGTCAGTGGGGTGGTATAGCTTGCAACAAAGCAGGAAGCATAACAGAAATCCACTATGGGAAATATTATAATAATTATAAAGAAGGGATTCAATTTGCAACACTCAATCTCTCTGCTTTCCACAACTTAGAAAAGCTTGTTGTCATTGGAATTGAACTACAAGGGACCATCCCATCAAAAATAGGTATTCTCACCAAACTCACTTATCTAGATTTGTCCTACAATTCTCTTCAAGGTGAGATACCTCCTTCAATAGGAAATCTTATCCTATTACAGAACCTAGACTTTTCTAACAACAACATTCAAGGCTCCATTCCTCATGAGTTGGGGTTCCTCAAAAATCTTACTTTATTAGATCTTTCTCATAACAGAATCACCGGTTCCCTCCCTTCTAATTTGGATCAGCTAAACTTGCAAAGGTTGTGGCTAAATACAAACAACATCAATGGGAACATAGTACCCTGGTCAGCTAAAAGCCTCATCATCATTGATCTGAGTCACAACCTCATTAGTGGGGAAATACCATTATACCTTGACTATGTGCCACAAAATTTGAATCTAAGTTACAATCATCTCACCGGAATTGTTCCTCCATATTTTAGTTTTGTCAATAATTTGGACATTTCCCACAATTATTTGAACGGTCCCATTCCAAATGGTGTTCATCCTGAAGCTCTAATAGGCAATAAAGATATTTGTAGTGACAATCCTTCTAACCAAATCCAATTTCAATTCCAACCTTGTCCAACTCCCAACAAGATAAGTAAAAAAGTAATGCACAATCTACCCATAATTCTTCCTATCCTCATTTTCCTAATCCTAGCCTTCTCACTACTCGTGTATCTAAAGTTTCATTGCATTGCAATTAAGAACAAACATACAAACACAACGACCCCTAAGAATGGAGATTTGTTCTCAATATGGAATTATGATGGAAAAATAGCATATGAAGACATCATCAGAGTAACAGAAGACTTTGACAAGAAATATTGCATTGGAACAGGGGCATATGGGAGTGTTTACAAGGCACAATTACCTAATGGCAAGGTGGTTGTCTTAAAAAAATTCCATGGTTTTGAAGCAGAGGTGCCAACTTTTGATGAGAGTTTTAGAAATGAAGTGAGGGTATTATCAGAAATAAAGCATCGACATATTGTGAAGCTGTATGGATTCTGCTTGCATAGAAGAGTCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGAGTGGTGACATAAAAGCAATGGAGTTGGATTGGAGAAAGAGGATTAACATTGTTAAAGGTGTTGCACATGCTCTCTCATATCTTCATAATGATTGCACCCCTCCAATAGTACATAGGGACATAGCTACCACCAATATCTTGCTTAACTCAGAGTGGCAACCCAGTGTTTCTGACTTTGGCATAGCTAGACTCCTTAAACTTGATTCATCCAATCGAACAGTAGTTGCAGGAACCATTGGATATATAGCTCCAGGTAAGATATTGTTTAATCAAGTTAATTTTCAACAATTTTTCTTTGTTTTCCTAAACTTGTTTATGTTGATATGTTTAATGCAGAGCTTGCTTATACAACAATTGTGA 3669 0.3854 MGMGSSQSQLQLDLEANALLNSGWWDTSLPYYNVSRPCQWYGIVCNKARSITEISYGGYGYDKVVQFATLNLSAFPNLEKLTVSETGLQGTIPSEIGTLTKLTYLHLTSNYLEGEIPPSIGNLSLLQNLNISNNHIQGEIPPSMGNLSLLQSLHISMNDIQGSIPHELGFLKNLNTLDLSRNNIQGSIPRELGFLKNLTALDLSGNRINGTLPISLDISNNLLVGSLPSQLRYLPNLTHLDLSHNELTGPVPQYIHASFVDFSYNNLKGPIPDGFDHYGALIGNKNVCSDIPYQQLHYQFKPCSASSKTTTKLILATVLFVYIYLILASSLRMYCLKLHCKEIKNKHAESTTTEDFDMKYCIGTGAYGSVYKAQLPSGKVVALKKLHGFEAEVPALDESFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKEEAMELDWRKRVNIVKGIAHALSYLHHDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLLKHDSSNQTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILSSIQSPCAQGIKLWEILDQRLPLPNMSVSLDIVRVAIVAFACLNLNPCSRPTMKYVSQCFRTPITSSTIPSLEISLQQLMRMQFVFISNFNVFLLLFICGVMIQSPSATPSQLQLDLEANALLNSRWWDSDFNISDRCQWGGIACNKAGSITEIHYGKYYNNYKEGIQFATLNLSAFHNLEKLVVIGIELQGTIPSKIGILTKLTYLDLSYNSLQGEIPPSIGNLILLQNLDFSNNNIQGSIPHELGFLKNLTLLDLSHNRITGSLPSNLDQLNLQRLWLNTNNINGNIVPWSAKSLIIIDLSHNLISGEIPLYLDYVPQNLNLSYNHLTGIVPPYFSFVNNLDISHNYLNGPIPNGVHPEALIGNKDICSDNPSNQIQFQFQPCPTPNKISKKVMHNLPIILPILIFLILAFSLLVYLKFHCIAIKNKHTNTTTPKNGDLFSIWNYDGKIAYEDIIRVTEDFDKKYCIGTGAYGSVYKAQLPNGKVVVLKKFHGFEAEVPTFDESFRNEVRVLSEIKHRHIVKLYGFCLHRRVMFLIYQYMEKGSLFSVLSGDIKAMELDWRKRINIVKGVAHALSYLHNDCTPPIVHRDIATTNILLNSEWQPSVSDFGIARLLKLDSSNRTVVAGTIGYIAPGKILFNQVNFQQFFFVFLNLFMLICLMQSLLIQQL. 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00629 1222 ProSiteProfiles Leucine-rich repeat profile. 803 826 IPR001611 GO:0005515
Seca1g00629 1222 Gene3D Ribonuclease Inhibitor 165 214 IPR032675 -
Seca1g00629 1222 Gene3D Ribonuclease Inhibitor 8 164 IPR032675 -
Seca1g00629 1222 Gene3D Ribonuclease Inhibitor 824 931 IPR032675 -
Seca1g00629 1222 Gene3D Ribonuclease Inhibitor 663 823 IPR032675 -
Seca1g00629 1222 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 69 299 - -
Seca1g00629 1222 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 689 933 - -
Seca1g00629 1222 ProSiteProfiles Protein kinase domain profile. 356 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00629 1222 SMART LRR_sd22_2 801 824 - -
Seca1g00629 1222 SMART LRR_sd22_2 234 257 - -
Seca1g00629 1222 SMART LRR_sd22_2 171 192 - -
Seca1g00629 1222 SMART LRR_sd22_2 195 220 - -
Seca1g00629 1222 SMART LRR_sd22_2 99 125 - -
Seca1g00629 1222 SMART LRR_sd22_2 753 785 - -
Seca1g00629 1222 ProSitePatterns Protein kinases ATP-binding region signature. 1021 1043 IPR017441 GO:0005524
Seca1g00629 1222 Gene3D Phosphorylase Kinase; domain 1 328 432 - -
Seca1g00629 1222 Gene3D Phosphorylase Kinase; domain 1 977 1093 - -
Seca1g00629 1222 SUPERFAMILY L domain-like 32 819 - -
Seca1g00629 1222 SUPERFAMILY Protein kinase-like (PK-like) 995 1193 IPR011009 -
Seca1g00629 1222 SUPERFAMILY L domain-like 719 924 - -
Seca1g00629 1222 ProSitePatterns Tyrosine protein kinases specific active-site signature. 470 482 IPR008266 GO:0004672|GO:0006468
Seca1g00629 1222 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1139 1151 IPR008266 GO:0004672|GO:0006468
Seca1g00629 1222 ProSiteProfiles Leucine-rich repeat profile. 173 196 IPR001611 GO:0005515
Seca1g00629 1222 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Seca1g00629 1222 Pfam Protein kinase domain 361 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00629 1222 Pfam Protein kinase domain 1017 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00629 1222 FunFam Os07g0541700 protein 1094 1181 - -
Seca1g00629 1222 FunFam Leucine-rich repeat receptor protein kinase MSP1 978 1093 - -
Seca1g00629 1222 SUPERFAMILY Protein kinase-like (PK-like) 348 610 IPR011009 -
Seca1g00629 1222 Pfam Leucine Rich repeat 234 249 IPR001611 GO:0005515
Seca1g00629 1222 Gene3D Ribonuclease Inhibitor 215 295 IPR032675 -
Seca1g00629 1222 PRINTS Leucine-rich repeat signature 237 250 - -
Seca1g00629 1222 PRINTS Leucine-rich repeat signature 801 814 - -
Seca1g00629 1222 FunFam MDIS1-interacting receptor like kinase 2 430 618 - -
Seca1g00629 1222 ProSiteProfiles Protein kinase domain profile. 1015 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00629 1222 Pfam Leucine rich repeat 76 136 IPR001611 GO:0005515
Seca1g00629 1222 Pfam Leucine rich repeat 755 814 IPR001611 GO:0005515
Seca1g00629 1222 Pfam Leucine rich repeat 150 208 IPR001611 GO:0005515
Seca1g00629 1222 Gene3D Transferase(Phosphotransferase) domain 1 433 621 - -
Seca1g00629 1222 Gene3D Transferase(Phosphotransferase) domain 1 1094 1198 - -
Seca1g00629 1222 SMART tyrkin_6 356 612 IPR020635 GO:0004713|GO:0006468
Seca1g00629 1222 SMART LRR_typ_2 801 825 IPR003591 -
Seca1g00629 1222 SMART LRR_typ_2 234 258 IPR003591 -
Seca1g00629 1222 SMART LRR_typ_2 171 195 IPR003591 -
Seca1g00629 1222 SMART LRR_typ_2 123 147 IPR003591 -
Seca1g00629 1222 SMART LRR_typ_2 753 777 IPR003591 -
Seca1g00629 1222 SMART LRR_typ_2 99 122 IPR003591 -
Seca1g00629 1222 PANTHER LEUCINE RICH REPEAT KINASE 2 75 616 - -
Seca1g00629 1222 FunFam Leucine-rich repeat receptor protein kinase MSP1 336 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00629 Seca-Chr1 7776673 7783015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00629 741 930 Receptor kinase-like Gene Family AT4G08850 31.111 8.14e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00629 Pkinase 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00629 - - aew:130757943 698.353