Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00628 ATGATGGTGACTACAGAACCATCGCAGCTTCAATTGGAAGCTAATGCTATACTGACTGGGGAATGGTGGAACACGTCCCATTCTGACTTCAATATCTCCAATCGTTGTGAATGGGATACTATAGTTTGCAACAAGGCTGGAAGCATAATAGGAATCCAAATCGACTATAAGGATTATCCTGCAACCAAGGCAGAGTTTCAATTCACAACACTCAATCTCTCTGCTTTCCAGAATTTACAAAGCCTTGCTGTTAGGGGAAGACTACGAGGGACTATCCCAATTCAAATAGGTATTCTGGCCAAACTCACACATCTTGACCTGTCACAAAATGCTCTTCAAGGTAAGATACCTCCTTCTATAGGAAATCTTAGCCTATTAGATTTTCTGAATATCTCTAACAACAAAATTCAAGGCTCCATTCCTGCTGAGTTAGGATTCCTGAAAAATCTTACTGTGTTAAATTTGTCTATTAACAAAATCAATGGAACCTTCCCTATTTCACTTACAAATCTCACCCAATTAAAAATTCTTGACATTTCCCATAATCAACTCGTAGGTTTTCTCCCTTCTAATTTAGGACAATTAAAAAACTTAAACCGTTTGGATCTAAGCGACAATAATCTCAAAGGTCCAATTCCCGAGGGTATTGATCCTTATGCTCTAAATCTAATAGACAACAAGGATATATGTAGTGACAATAACTATACCCAATTCCAATTTCAATTCCATTTCCAACCTTGTTCACCTCGTAATAAGACAAGAAACAAAGTTACACACAAGCTAGTCATAGTCATAGTTCTTTCTATCCTCATTTTTCTAATCCTAGCCTTCTTAGTCTATCTAAAGCTTCATCATCACATTGCAATTAAGAAGAATAAACATGCAAAGACGATGACTACTAAGAATGGGGATTTGTTCTACATATGGACTTATGATGGAAACATAGCATATGAAGATATCATCAGAGTAACAGAAGACTTTGACTTGAAATACTGCATTGGAACAGGAGCATATGGGAGTGTTTATAAGGCACAATTACCTAGTGGCAAGGTTGTTGCCTTAAAGAAACTCCATTGTTTTGAAGCAGAGGTGCCGAGTTTTGATGAGAGTTTCAGAAATGAAGTAAAAATATTATCAGAAACAAAGCATCGAAATATTGTGAAGCTTTATGGATTCTGCTTGCATAAAAGAATCATGTTTTTGATCTATCAGTACATGGAGAAAGGAAGTTTGTTCTCTGTCCTGTATGATGATGAAGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTGGCATTGTCAAAGGCATTGCACTTGCTCTGTCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACAAATATCTTACTTAACTCTGAGTGGCAGCCTAGTGTTGCTGACTTTGGCACAGCCAGACTTCTCCATCATGATTCATCCAATCAAACTATACTTGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCCTATACTATGGTTGTAAGTGAAAAGTGTGATGTTTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGGCATCCAAAGGAAATATTGTCATCTGTTCAATCCTCAACATCTGCTAATGGTATCACATTATGTGAAATACTGGACAAACGACTCCCACTACCTAATAGGACTATTTTACTAGACATAGTTCATGTTGCCATAGTAGCATTTGCTTGCTTAAATCATAATCCTTGCTCTCGGCCAACAATGAAATGTGTTTCTCACTTTTTTCTTACTCACCCAATACCATTGAGCATTCCTTTACAGGAAATTTCATTGCTACAGCTCATGAGTCAAGAACTCAAACATTATGTAAAATTGTGA 1875 0.3733 MMVTTEPSQLQLEANAILTGEWWNTSHSDFNISNRCEWDTIVCNKAGSIIGIQIDYKDYPATKAEFQFTTLNLSAFQNLQSLAVRGRLRGTIPIQIGILAKLTHLDLSQNALQGKIPPSIGNLSLLDFLNISNNKIQGSIPAELGFLKNLTVLNLSINKINGTFPISLTNLTQLKILDISHNQLVGFLPSNLGQLKNLNRLDLSDNNLKGPIPEGIDPYALNLIDNKDICSDNNYTQFQFQFHFQPCSPRNKTRNKVTHKLVIVIVLSILIFLILAFLVYLKLHHHIAIKKNKHAKTMTTKNGDLFYIWTYDGNIAYEDIIRVTEDFDLKYCIGTGAYGSVYKAQLPSGKVVALKKLHCFEAEVPSFDESFRNEVKILSETKHRNIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDEEAMELDWRKRVGIVKGIALALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLLHHDSSNQTILAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILSSVQSSTSANGITLCEILDKRLPLPNRTILLDIVHVAIVAFACLNHNPCSRPTMKCVSHFFLTHPIPLSIPLQEISLLQLMSQELKHYVKL. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00628 624 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515
Seca1g00628 624 SMART LRR_typ_2 99 123 IPR003591 -
Seca1g00628 624 SMART LRR_typ_2 195 223 IPR003591 -
Seca1g00628 624 SMART LRR_typ_2 171 194 IPR003591 -
Seca1g00628 624 PANTHER LEUCINE RICH REPEAT KINASE 2 87 596 - -
Seca1g00628 624 SMART tyrkin_6 327 594 IPR020635 GO:0004713|GO:0006468
Seca1g00628 624 SMART LRR_sd22_2 195 218 - -
Seca1g00628 624 SMART LRR_sd22_2 171 194 - -
Seca1g00628 624 SMART LRR_sd22_2 99 125 - -
Seca1g00628 624 ProSiteProfiles Protein kinase domain profile. 327 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00628 624 Gene3D Phosphorylase Kinase; domain 1 285 405 - -
Seca1g00628 624 Gene3D Ribonuclease Inhibitor 8 254 IPR032675 -
Seca1g00628 624 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Seca1g00628 624 ProSitePatterns Tyrosine protein kinases specific active-site signature. 451 463 IPR008266 GO:0004672|GO:0006468
Seca1g00628 624 SUPERFAMILY Protein kinase-like (PK-like) 308 592 IPR011009 -
Seca1g00628 624 FunFam Leucine-rich repeat protein kinase family protein 290 405 - -
Seca1g00628 624 Pfam Leucine rich repeat 149 208 IPR001611 GO:0005515
Seca1g00628 624 Pfam Protein kinase domain 332 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00628 624 Gene3D Transferase(Phosphotransferase) domain 1 406 597 - -
Seca1g00628 624 SUPERFAMILY L domain-like 36 219 - -
Seca1g00628 624 FunFam MDIS1-interacting receptor like kinase 2 406 599 - -
Seca1g00628 624 PRINTS Leucine-rich repeat signature 102 115 - -
Seca1g00628 624 PRINTS Leucine-rich repeat signature 171 184 - -
Seca1g00628 624 FunFam Nuclear pore complex protein NUP107 9 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00628 Seca-Chr1 7761377 7763596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00628 72 499 Receptor kinase-like Gene Family AT4G08850 40.406 6.01e-100 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00628 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00628 - - var:108327175 692.575