Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00627 ATGAATAATAATATCACTATCATTCATAATACCATGGCCTTCCCATCACCACCTCACAGTTTCATGTTTAACACCAATGAAGATCACCTCCCTTCAACCTCTCTCAATACCTTCCCCTCTTTCCCACCCCAACACTTTCAAGGTTGTGTTATTGTAGGGGGTGTACCTTTTTTGTTGAAGCGGTCCATGTCATTTTCAGGCATTGAGAACAAGTGTGATGAAGTGCATGGTGATGATGAGTTATCTGATGATGGATTCCAAAGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAGGGCCCTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAATTGGCTAAGGCTCTGGGGTTGCAGCCAAGACAGATTGCTATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAACTGGAGAAGGAATATGAAGTCCTCAAGAAGCAATTTGAAGCTGTCAAGACTGACAACAATGTCCTTAAGGCTCAGAACCAGAAACTTCATGCAGAGTTACAAGCTCTAAAAAGTAGGGATTGGTGTGAAGCTGGAACAATCAGCCTTAAGAAAGAAACTGAGGGTTCTTGGAGCAATAATGGAAGTGATAACAGCTCAGATATCAATTTAGATCTGTCAAGAACACCAGTTTTAAACAGTCCTGTATCTTCTCAGAACTGTAAAAGCCTTCTACCCACTTCATTAAAACCCACCAGCATAACACAGCTCCTTCAGTACTCATCAAGACCAGATCTTCAAGATGAAGGCTTCTGCAACATGCTTCACAACATTGATCAGCAGCAGAACTTTTGGCCCTGGCCTGAGCAGCACCATTTCCATTGA 864 0.4306 MNNNITIIHNTMAFPSPPHSFMFNTNEDHLPSTSLNTFPSFPPQHFQGCVIVGGVPFLLKRSMSFSGIENKCDEVHGDDELSDDGFQSGEKKKRLNLEQVRALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKTDNNVLKAQNQKLHAELQALKSRDWCEAGTISLKKETEGSWSNNGSDNSSDINLDLSRTPVLNSPVSSQNCKSLLPTSLKPTSITQLLQYSSRPDLQDEGFCNMLHNIDQQQNFWPWPEQHHFH. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00627 287 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Seca1g00627 287 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Seca1g00627 287 SMART HOX_1 89 150 IPR001356 GO:0003677
Seca1g00627 287 FunFam Homeobox-leucine zipper protein ATHB-13 83 150 - -
Seca1g00627 287 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Seca1g00627 287 Coils Coil 138 186 - -
Seca1g00627 287 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Seca1g00627 287 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Seca1g00627 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 77 259 IPR045224 GO:0003700
Seca1g00627 287 Gene3D - 84 155 - -
Seca1g00627 287 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Seca1g00627 287 CDD homeodomain 91 147 IPR001356 GO:0003677
Seca1g00627 287 Pfam Homeobox associated leucine zipper 146 185 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00627 Seca-Chr1 7749461 7751438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00627 12 282 Homeobox Transcription Factor Family AT5G15150 50.165 2.25e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca1g00627 Homeodomain 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00627 K09338 - gmx:100790803 402.134