Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00618 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTCAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTCTGGTCACTTATGTACAGGAACATGGTCCTGGCAATTGGAGGGCTGTTCCCACCAAGACAGGGTTGTCAAGATGCAGTAAGAGTTGCAGACTTAGATGGACAAATTACCTAAGGCCAGGAATCAAAAGAGGCAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCTATAGCTTCATACCTTCCACAGAGAACAGATAATGACATAAAAAATTATTGGAACACCCATTTGAAAAAGAAGCTAAAGAAATTGCAAACAGGTTCTGAAGGGAGTTTGGGTGATGGGTTTCCAGCATCACAGAGGATTCCTAGAGGTCAATGGGAAAGAAGGCTCCAAACAGATATCCAAATGGCTAAAAGAGCTCTTAGTGAAGCCCTTTCACCAGAGAAACAATCTTCTTTATCTGCATCAAACCCTTCCAACAGTAGTACTACCTCCTCTTCCACTAAACCAACACAATCTTTGTGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGCTGAAAGGTTGGATGAAAAATCCACCAAAGTCCTCTAGGACTAACTCAGCTATGACCCAAAATTCCTTCAACAATTTAGCTGCTGCAGGGACTGACACTGCTTCTAGTGAAGTAAGCTTAAATGGAGCAAAAGGAAACAGTGCTGAATTGTCTGAGACATTTGAATCCTTGTTTGGTTTTGAGTCTTTGGAGTCATCAAATTCTGAGTTTTCTCAGTCTTTGTCCCCTGAGGCTACTATTTTACAAGATGAAAGCAAGCCTGATATTGGTGCAGAAATAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGTCCAGAGAAAGTAGGCATAAGTGATGCTCAGATTTTCTAG 972 0.4156 MGRPPCCDKEGVKKGPWTPEEDIILVTYVQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSEGSLGDGFPASQRIPRGQWERRLQTDIQMAKRALSEALSPEKQSSLSASNPSNSSTTSSSTKPTQSLCYASSADNIARLLKGWMKNPPKSSRTNSAMTQNSFNNLAAAGTDTASSEVSLNGAKGNSAELSETFESLFGFESLESSNSEFSQSLSPEATILQDESKPDIGAEIMPFSLLEKWLLDEAGCPEKVGISDAQIF. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00618 323 Gene3D - 69 127 - -
Seca1g00618 323 MobiDBLite consensus disorder prediction 161 189 - -
Seca1g00618 323 MobiDBLite consensus disorder prediction 119 141 - -
Seca1g00618 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca1g00618 323 FunFam Transcription factor MYB30 68 126 - -
Seca1g00618 323 CDD SANT 16 61 IPR001005 -
Seca1g00618 323 Gene3D - 13 66 - -
Seca1g00618 323 FunFam MYB-related transcription factor 13 66 - -
Seca1g00618 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca1g00618 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g00618 323 SMART sant 66 114 IPR001005 -
Seca1g00618 323 SMART sant 13 63 IPR001005 -
Seca1g00618 323 CDD SANT 69 111 IPR001005 -
Seca1g00618 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Seca1g00618 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca1g00618 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca1g00618 323 MobiDBLite consensus disorder prediction 157 189 - -
Seca1g00618 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g00618 323 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00618 Seca-Chr1 7518884 7520248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00618 1 320 MYB Transcription Factor Family AT5G62470 52.762 2.17e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g00618 Myb_DNA-binding 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00618 K09422 - gmx:778080 464.151