Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00617 ATGGATATAACCCCAACAACAATGATCAACAACAACACCACAACTCCAACCAGTGCAGCAACAACACCAACAACAAAATCACCAGAACATGACACTGAAACACCAACCCGGATCAACACAACAACAAAGCCCTTATCTTTTTCAAATGGGGTTCTCAAACGCCACACTCACTCTCACTCCCACCACCACCACCCTATAGCCACCACCAACCACCACCACCCCATGGCGGTTATTTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTAGGTGGCCACGCCTTAGACGGTTGCGGCGAGTTCATGCCGTCCCCCACCGCCACCGCCGCCGACCCAAGTTCCATAAAATGCGCCGCCTGTGGCTGCCACCGGAATTTCCACCGCCGTGAGCCAGAAGAGCCACCAATCACCACCGCCACACATGTAATAGAGTACCAACCTCACCACCGCCACCACCCTCCTCCGCCGCCGTTTCAGCCGTCGAACCGGAGCCCCAATTCAGCTTCTCCGCCGCCGATCTCCTCGTCTTACTACCCGTCCGCCCCTCACATGCTGCTGGCTCTCTCCGCCGGACTGGCAGCGCCGCCGGAAAACACAGCTGGCCCCACCATTATTCACCATAACAACAACAGCGCGATGGTGTCCCCTGGGTCCCACACGAGGAAACGGTTCAGGACAAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCAAAGGTTCGCAGAGAAAGTTGGGTGGAAGATGCAGAAGAGGGATGAGGATTTGGTGCAAGAGTTATGCAACGAGATTGGTGTTGATCGAGGTGTGCTTAAGGTTTGGATGCATAACAACAAGAACACTTTTGTCAAAAAAGATAGTAATAATAATAATAATAATAGTAATGAGAACAATGACGATAACAACAACAATGCTGGAAATAAGAGCTTTTTGCCTCTTGAAGATGACCCCATCAACCATAACAACAACAATGCTGATATCAATGGCAACGATGGTGCTGAAGATCCAAGTCATAATCATCACTACCACCACCAGAATGAAGCAACTGTTCGTGCTAATGGGTCATCTTCTTCTTCTTGA 1074 0.5047 MDITPTTMINNNTTTPTSAATTPTTKSPEHDTETPTRINTTTKPLSFSNGVLKRHTHSHSHHHHPIATTNHHHPMAVIYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPITTATHVIEYQPHHRHHPPPPPFQPSNRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPENTAGPTIIHHNNNSAMVSPGSHTRKRFRTKFSQEQKEKMQRFAEKVGWKMQKRDEDLVQELCNEIGVDRGVLKVWMHNNKNTFVKKDSNNNNNNSNENNDDNNNNAGNKSFLPLEDDPINHNNNNADINGNDGAEDPSHNHHYHHQNEATVRANGSSSSS. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00617 357 MobiDBLite consensus disorder prediction 331 345 - -
Seca1g00617 357 Pfam ZF-HD protein dimerisation region 77 131 IPR006456 -
Seca1g00617 357 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Seca1g00617 357 MobiDBLite consensus disorder prediction 152 167 - -
Seca1g00617 357 MobiDBLite consensus disorder prediction 147 176 - -
Seca1g00617 357 FunFam Zinc-finger homeodomain protein 2 207 282 - -
Seca1g00617 357 MobiDBLite consensus disorder prediction 199 219 - -
Seca1g00617 357 MobiDBLite consensus disorder prediction 280 357 - -
Seca1g00617 357 ProSiteProfiles 'Homeobox' domain profile. 219 283 IPR001356 GO:0003677
Seca1g00617 357 SUPERFAMILY Homeodomain-like 208 280 IPR009057 -
Seca1g00617 357 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 79 130 IPR006456 -
Seca1g00617 357 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 279 - -
Seca1g00617 357 MobiDBLite consensus disorder prediction 202 217 - -
Seca1g00617 357 MobiDBLite consensus disorder prediction 1 45 - -
Seca1g00617 357 MobiDBLite consensus disorder prediction 314 328 - -
Seca1g00617 357 NCBIfam homeobox domain, ZF-HD class 221 278 IPR006455 -
Seca1g00617 357 Gene3D - 206 281 - -
Seca1g00617 357 MobiDBLite consensus disorder prediction 280 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00617 Seca-Chr1 7434475 7435548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00617 75 281 ZF-HD Transcription Factor Family AT1G69600 53.704 3.53e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca1g00617 ZF-HD_dimer 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00617 - - psat:127128550 360.533