Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00608 ATGGAAGGGACAGGTCCAAAAACATTCAGCTTCGACACTGAGCCGCAAAATCCCAGATCAACCATAAAGCAACTTTCTTTTGCAAATCTTGCTGAGAATTACCCACCTGGCTTCCCCAAAAAGGTATTTGCAGAGATCATAGGCACCTTCCTATTGGTTTTTGTGGGAAGTGGTTCTGCTGGCCTTAGTGCTATTGATGAAAACAAAGTCTCAAAATTGGCAGCTTCACTTGCAGGGGGATTCATAGTGACAGTCATGATTTATGCAATTGGACACATCTCTGGGGCACACATGAATCCAGCAGTCTCCTTAGCTTTTGCCACAGTCAGCCATTTTCCTTGGAAACAGGTTCCATTTTACATTGCAGCTCAACGCACAGTAGCAATTTCTGCTTCATATACGCTACGAGTGCTATTAGAGCCATCAAAGCAGATTGGGGCAACGTCACCTTCTGGATCAAACATTCAAGCATTAATTATGGAAATTGTGTCAACATTCACTATGGTTTTCATTGCCACCGCCGTTTCCACCGACACAAAAGCTGTAAAATTAATGCTATAA 561 0.4296 MEGTGPKTFSFDTEPQNPRSTIKQLSFANLAENYPPGFPKKVFAEIIGTFLLVFVGSGSAGLSAIDENKVSKLAASLAGGFIVTVMIYAIGHISGAHMNPAVSLAFATVSHFPWKQVPFYIAAQRTVAISASYTLRVLLEPSKQIGATSPSGSNIQALIMEIVSTFTMVFIATAVSTDTKAVKLML. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00608 186 PANTHER AQUAPORIN NIP2-1 24 183 IPR034294 -
Seca1g00608 186 Pfam Major intrinsic protein 38 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00608 186 Gene3D Glycerol uptake facilitator protein. 9 185 IPR023271 -
Seca1g00608 186 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Seca1g00608 186 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00608 186 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00608 186 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00608 186 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00608 186 SUPERFAMILY Aquaporin-like 34 181 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00608 Seca-Chr1 7322682 7326500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00608 40 182 Major Intrinsic Protein MIP AT1G80760 40.559 4.28e-36 125