LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00608	ATGGAAGGGACAGGTCCAAAAACATTCAGCTTCGACACTGAGCCGCAAAATCCCAGATCAACCATAAAGCAACTTTCTTTTGCAAATCTTGCTGAGAATTACCCACCTGGCTTCCCCAAAAAGGTATTTGCAGAGATCATAGGCACCTTCCTATTGGTTTTTGTGGGAAGTGGTTCTGCTGGCCTTAGTGCTATTGATGAAAACAAAGTCTCAAAATTGGCAGCTTCACTTGCAGGGGGATTCATAGTGACAGTCATGATTTATGCAATTGGACACATCTCTGGGGCACACATGAATCCAGCAGTCTCCTTAGCTTTTGCCACAGTCAGCCATTTTCCTTGGAAACAGGTTCCATTTTACATTGCAGCTCAACGCACAGTAGCAATTTCTGCTTCATATACGCTACGAGTGCTATTAGAGCCATCAAAGCAGATTGGGGCAACGTCACCTTCTGGATCAAACATTCAAGCATTAATTATGGAAATTGTGTCAACATTCACTATGGTTTTCATTGCCACCGCCGTTTCCACCGACACAAAAGCTGTAAAATTAATGCTATAA	561	0.4296	MEGTGPKTFSFDTEPQNPRSTIKQLSFANLAENYPPGFPKKVFAEIIGTFLLVFVGSGSAGLSAIDENKVSKLAASLAGGFIVTVMIYAIGHISGAHMNPAVSLAFATVSHFPWKQVPFYIAAQRTVAISASYTLRVLLEPSKQIGATSPSGSNIQALIMEIVSTFTMVFIATAVSTDTKAVKLML.	187

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00608	186	PANTHER	AQUAPORIN NIP2-1	24	183	IPR034294	-
	Seca1g00608	186	Pfam	Major intrinsic protein	38	183	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca1g00608	186	Gene3D	Glycerol uptake facilitator protein.	9	185	IPR023271	-
	Seca1g00608	186	ProSitePatterns	MIP family signature.	97	105	IPR022357	-
	Seca1g00608	186	PRINTS	Major intrinsic protein family signature	79	103	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca1g00608	186	PRINTS	Major intrinsic protein family signature	40	59	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca1g00608	186	PRINTS	Major intrinsic protein family signature	160	178	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca1g00608	186	PRINTS	Major intrinsic protein family signature	116	135	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca1g00608	186	SUPERFAMILY	Aquaporin-like	34	181	IPR023271	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00608	Seca-Chr1	7322682	7326500	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00608	40	182	Major Intrinsic Protein MIP	AT1G80760	40.559	4.28e-36	125

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00608	K09874		-	gmx:100788071	241.891

Showing 1 to 1 of 1 entries