Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00601 ATGCGGAATTTTTTTGTCCTTAATTTCAACGGCCCAGAAATATGGACTGTCTTTCTTGTTAGTATATGTGGTGTGATGATGATGATGATGGGGAGTAGTCAATCTGCGTCTGCTGCAGTACCATCACAGCTTCAATTGGATTTGGAAGCTAAAGCCATAATCAACAGTGGATGGTGGAACACTTCCCATCCATACTACAATGTCTCCCGTCGCTGTGAACAGTGGAATTATATAGTTTGCAACAAGGCAGGAAGCATAACAGGAATCTACTACTTTGGGCCATATTCTGAAGCAGCGGTTCAATTTGCAACACTCAACCTCTCTGCTTTCCAGAACTTAGAAAAGCTTGTTGTCTGGAGAAAACTAAAAGGGGCCATTCCACCAGAAATAGGTATTCTCACCAAACTCACTTATCTCGATTTGTCCCACAATTCTCTTGAAGGGGAGATACCCCCTTCAATAGGAAATCTTAGCCTATTGCAGAGCCTTTACATCTCTAATAACAACATTCAAGGCCCCATTCCTCATGAGTTGGGCTTCCTCAAAAGTCTTAGGGCAATATATCTATCTCATAACAGAATCAATGGGACCTTACCCATTTCACTTACAAATCTCACCCAGTTACAAGAGCTTGACATTTCCAACAATTTTCTTGTTGGTTCCCTCCCTTCTAATTTAGATCAATTATCCAACTTGCAAGAGTTATGGCTAGGTAACAACTCCATCATTGGGACTATCCCACCAGAAATTGGTACTCTCACCAAACTCTCTTATCTCCATTTGTCCACCAATTTTCTTGAAGGTGAGATACCCCCATCAATAGGAAATCTTAGCCTATTACAGAGCCTATACATCTCTAACAACCACATTCAAGGCTCTATTCCTCATGAGTTGGGCTGCCTAACAAATCTTACTTCATTAGATCTGTCTAACAACTACATCCAAGGCTTCATTCCTCATGAGTTGGGCTTCATGAAAAGTCTAAAGATATTAGATCTATCTCATAACAGAATCAATGGGACCTTGCCAATTTCACTTACAAATTTCACCAAATTAGAAAAGCTTGACATTTCCAACAATCATCTTGTTGGTTCCCTCCCTTTTAATTTAGATCAATTATCCAACTTGCAAGAGTTGCGGCTAAGTAACAACTCCATCAATGGGACCTTGCCTATTTCGCTTACAAGTCTCACCAAATTAGAAAAACTTGACATTTCAAACAATCTTCTCCTTGGTTCCCTTCCTTCTAATTTAGGTCAATTAACCCACTTATACTTTTTGGATCTAAGCTACAATAATCTCACCGGAACGGTTCCCCTATTTCTCCTTAATGTTCCTCAAATGAACATTTCCTACAATTGTTTGAAAGGTCCCATTCCAAATGGAGTCATTCCTAATGCTTTAATCGGCAACAAGGATGTATGTAGTGACATTATATTTAACCAACTACAATTCCAATTTCAACCCTGTTCAGCTCATGGCAAGACAAGTAACAAAGTAATGCAAAATCTACTCATACTTCTTCCTATCCTTTTTTTCCTAATTCTGGCCTTTTCACTATTCGTGTGTCTAAAGCTTCATCACATTGCAACTAAAGACAAACATGCAAGTACAATGGCAACTAAGAATGGGGATATATTCTCTATATGGAACTATGATGGAAACATAGTGTATGAAGACATCATTAGAGCAACAGAAGATTTTGACATGAAATATTGCATTGGGACAGGAGCGTATGGGAGTGTTTACAAGGCTCAATTACCACATGGCAAGGTTGTTGCCTTGAAGAAACTCCATGGTTTCGAAGCAGAGGTGCCAGCTTTGGATGAGAGTTTTAGGAATGAAGTGAGGGTATTATCAGAAATAAAACATCGACACATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGAAGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTAACATTGTTAAAGGCATTGCACATGCTTTGTCATATCTTCATCATGATTGCAACCCTCCAATAGTACATAGAGACATAGCTACGAGTAATATCTTACTTAACTCTGAGTGGGAGCCAAGTGTTTCTGACTTTGGCACAGCCAGACTCCTCCAACATGATTCATCAAATCAAACTATAGTTGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCCTACACAATGGTTGTGAGTGAAAAAAGTGATGTCTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGGAAGCATCCTAAGGAAATATTGTCATCACTTGAATCAAGATCAACTCATAACATAGCACTATGTGAAGTATTGGACCAACGCCTCCCACTACCAAATATGTCAGTTTTAATTGACATAGTTCATGTTGCCATGGTAGCATTTTCATGCTTAAATCCCAATCCTAGCTCTCGGCCAACAATGAAACATGTCTCACAATGTTTTCTCACTCAACTAACACCATTAAACCTTTCTTTACGTGAAATTTCATTGCAGCAACTCATGAGTCAAGAAATAAGCATTATTTAG 2586 0.3894 MRNFFVLNFNGPEIWTVFLVSICGVMMMMMGSSQSASAAVPSQLQLDLEAKAIINSGWWNTSHPYYNVSRRCEQWNYIVCNKAGSITGIYYFGPYSEAAVQFATLNLSAFQNLEKLVVWRKLKGAIPPEIGILTKLTYLDLSHNSLEGEIPPSIGNLSLLQSLYISNNNIQGPIPHELGFLKSLRAIYLSHNRINGTLPISLTNLTQLQELDISNNFLVGSLPSNLDQLSNLQELWLGNNSIIGTIPPEIGTLTKLSYLHLSTNFLEGEIPPSIGNLSLLQSLYISNNHIQGSIPHELGCLTNLTSLDLSNNYIQGFIPHELGFMKSLKILDLSHNRINGTLPISLTNFTKLEKLDISNNHLVGSLPFNLDQLSNLQELRLSNNSINGTLPISLTSLTKLEKLDISNNLLLGSLPSNLGQLTHLYFLDLSYNNLTGTVPLFLLNVPQMNISYNCLKGPIPNGVIPNALIGNKDVCSDIIFNQLQFQFQPCSAHGKTSNKVMQNLLILLPILFFLILAFSLFVCLKLHHIATKDKHASTMATKNGDIFSIWNYDGNIVYEDIIRATEDFDMKYCIGTGAYGSVYKAQLPHGKVVALKKLHGFEAEVPALDESFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDEEAMELDWRKRVNIVKGIAHALSYLHHDCNPPIVHRDIATSNILLNSEWEPSVSDFGTARLLQHDSSNQTIVAGTIGYIAPELAYTMVVSEKSDVYSFGVVALETLVGKHPKEILSSLESRSTHNIALCEVLDQRLPLPNMSVLIDIVHVAMVAFSCLNPNPSSRPTMKHVSQCFLTQLTPLNLSLREISLQQLMSQEISII. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00601 861 PANTHER LEUCINE RICH REPEAT KINASE 2 120 837 - -
Seca1g00601 861 Pfam Leucine Rich Repeat 207 226 IPR001611 GO:0005515
Seca1g00601 861 SMART LRR_sd22_2 133 159 - -
Seca1g00601 861 SMART LRR_sd22_2 229 261 - -
Seca1g00601 861 SMART LRR_sd22_2 397 420 - -
Seca1g00601 861 SMART LRR_sd22_2 301 322 - -
Seca1g00601 861 SMART LRR_sd22_2 205 228 - -
Seca1g00601 861 SMART LRR_sd22_2 325 348 - -
Seca1g00601 861 SMART LRR_sd22_2 181 204 - -
Seca1g00601 861 SMART LRR_sd22_2 349 378 - -
Seca1g00601 861 FunFam Leucine-rich repeat receptor-like protein kinase TDR 215 492 - -
Seca1g00601 861 Pfam Protein kinase domain 573 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00601 861 SUPERFAMILY Protein kinase-like (PK-like) 551 833 IPR011009 -
Seca1g00601 861 Gene3D Ribonuclease Inhibitor 269 366 IPR032675 -
Seca1g00601 861 Gene3D Ribonuclease Inhibitor 367 483 IPR032675 -
Seca1g00601 861 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Seca1g00601 861 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Seca1g00601 861 Pfam Leucine rich repeat 135 194 IPR001611 GO:0005515
Seca1g00601 861 ProSitePatterns Tyrosine protein kinases specific active-site signature. 692 704 IPR008266 GO:0004672|GO:0006468
Seca1g00601 861 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Seca1g00601 861 ProSiteProfiles Protein kinase domain profile. 568 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00601 861 PRINTS Leucine-rich repeat signature 325 338 - -
Seca1g00601 861 PRINTS Leucine-rich repeat signature 136 149 - -
Seca1g00601 861 FunFam MDIS1-interacting receptor like kinase 2 647 840 - -
Seca1g00601 861 Gene3D Transferase(Phosphotransferase) domain 1 647 842 - -
Seca1g00601 861 FunFam Nuclear pore complex protein NUP107 34 200 - -
Seca1g00601 861 Gene3D Ribonuclease Inhibitor 177 268 IPR032675 -
Seca1g00601 861 Gene3D Phosphorylase Kinase; domain 1 529 646 - -
Seca1g00601 861 SUPERFAMILY L domain-like 104 465 - -
Seca1g00601 861 SMART LRR_typ_2 373 396 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 397 421 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 133 157 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 229 253 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 277 300 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 301 324 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 205 228 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 181 204 IPR003591 -
Seca1g00601 861 SMART LRR_typ_2 325 349 IPR003591 -
Seca1g00601 861 Gene3D Ribonuclease Inhibitor 43 176 IPR032675 -
Seca1g00601 861 SMART tyrkin_6 568 834 IPR020635 GO:0004713|GO:0006468
Seca1g00601 861 FunFam Leucine-rich repeat receptor protein kinase MSP1 531 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00601 Seca-Chr1 7206895 7209713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00601 112 740 Receptor kinase-like Gene Family AT4G08850 38.579 2.41e-151 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00601 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00601 - - vum:124822324 904.049