Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00599 ATGAATTTAGGAGGAGTCAACATGCCCAGAGCAAGTGACCTTCTTTTTGGTGTCTCAATCTTTGCTGAAGCAACAAAGGCTAAAATCATTGATCTTTCACATTCAGCTTTTGATGAGTTGTTGAGGATAGGAGTTGTGGGGAAACCTTTATGGCATTCCCAGGTAGACTATAGATTCGAGATTCTAAATGATATTGAATACTTGAGACAATTTGGTCAGGTTGATACAACACTAAGGGAGATTATGAAGTTAGTTGAGGTTAATGACCCTCAAACATTGCCAAGTTTTAACTCATTTGGAACTCAGTACCAAACATCAGAGCCAGCACATGAAGCAGCTCTGCAGATTGAAGCTTCACGTGAAACTGCATTTGTTAACATGAGTCCAATCAGCCTTGTTGAATTACTTATGGATGTGAATCAATGGTCGAGAGTATTTCACAAACTTGTCTCAAGAGCAATGATTTTGGTAACTTTTTTAGAGGGAGTGGAAGGAAGTTGTGATGGGAAATTGCACGTGATGAACACAGAATTTCATTTGCCTACAGCTCTTGTACGAAGTCGTGAGTGTTATTTTGCAAGGTACTGCAAGCAGTTGTCTCATGAGAAGTGGGTGGTCACTGATGTGTCGTTAGAGAAGTTTTTTCCTTCTCCATCAAACAATTTTCGGAAAAGACCATCAGGCTGTTTGATTACAGGGATGCCTAATGGATTCTCTAAGGTTGTATGGATCGAGCATGTGGAAGCAGATCATAGCCAACTGAGTGATAATTTCAAGCCACTAGTCACCTCTTGTTTGGCTTTTGGTGCACCGTGTTGGATTGCTTCCTTAGTTCGGCACAGTAAATGGTTTCAAAGTCTAAATGCTCCAACAGCTTATGCAGATCAAGGGGTTCGTATACCTCAGAGTGGGTGGACAAGTTTCTTGAAACTGGCAGATAGAATGATGAGAAAATTTTGTGTCAATGTGAGTGCTACTACGGACAATCCATGGAGGAGAAAATTTTGTGTCAATGTGAGTGCTACAGATGTGAAATTGATGATTAAGAATGATTTGGAAGGTTTTGCGAAAAAGCCTCCTGGTACACCGGTGGTTTTCACTACTTCTGTTTGGCTTGAAGTCTCCCCACATCGATTATTCAACTTCCTTCGTCATGAGAGTTCCAGAAGAGAGTGGGACAAGCTTTCACAAACACTTACCATTCAAGAATTCTCATGCATAGTCAAGGACGATCGTTCAGGGAATCGTGTTTCCTTGATTCGAGCAATTACATCTGAGGGGAAGACTGAAATCTTTTATCTGCAAGAGAGTTACACAGACTCCACAGGTTTCTACGTGGTTTATGCTCCACTAGATGAGCAAGCTTTATTAGCTCTTTCAAAAGGATGCAACCCAGACAATGTAATTGTCCTTCCATCAGGGTTTGCTATTCTCCCTGGACCTGGAGGGTTACCAGTAGAGGGTGAAGGAAAAGATAGAGGCTCTAACACTGGAAGTCTTCTAACTGTTGGATTCAATATCATTGATTGGTCCATCACTAATGAGACACCTATCACTCTTGAATCAGTTCAATCCATCTATGGTGTTATTGCAGATACTGTTACTGCTATAAAGGATGCGGTGCAATATCATAATCGACTCAACAATTGGATGAATGAAGAATGA 1665 0.4096 MNLGGVNMPRASDLLFGVSIFAEATKAKIIDLSHSAFDELLRIGVVGKPLWHSQVDYRFEILNDIEYLRQFGQVDTTLREIMKLVEVNDPQTLPSFNSFGTQYQTSEPAHEAALQIEASRETAFVNMSPISLVELLMDVNQWSRVFHKLVSRAMILVTFLEGVEGSCDGKLHVMNTEFHLPTALVRSRECYFARYCKQLSHEKWVVTDVSLEKFFPSPSNNFRKRPSGCLITGMPNGFSKVVWIEHVEADHSQLSDNFKPLVTSCLAFGAPCWIASLVRHSKWFQSLNAPTAYADQGVRIPQSGWTSFLKLADRMMRKFCVNVSATTDNPWRRKFCVNVSATDVKLMIKNDLEGFAKKPPGTPVVFTTSVWLEVSPHRLFNFLRHESSRREWDKLSQTLTIQEFSCIVKDDRSGNRVSLIRAITSEGKTEIFYLQESYTDSTGFYVVYAPLDEQALLALSKGCNPDNVIVLPSGFAILPGPGGLPVEGEGKDRGSNTGSLLTVGFNIIDWSITNETPITLESVQSIYGVIADTVTAIKDAVQYHNRLNNWMNEE. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00599 554 Pfam START domain 104 280 IPR002913 GO:0008289
Seca1g00599 554 SUPERFAMILY Bet v1-like 115 284 - -
Seca1g00599 554 CDD START_ArGLABRA2_like 26 281 - -
Seca1g00599 554 SUPERFAMILY Bet v1-like 304 483 - -
Seca1g00599 554 SMART START_1 68 283 IPR002913 GO:0008289
Seca1g00599 554 ProSiteProfiles START domain profile. 22 286 IPR002913 GO:0008289
Seca1g00599 554 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 542 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00599 Seca-Chr1 7182765 7202147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00599 13 541 Homeobox Transcription Factor Family AT4G04890 41.667 6.15e-117 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00599 K09338 - jre:108992281 472.626