Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00594 ATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGCAGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTGACATTGTCAAAGGCATTGCACATGCTCTGTCATATCTTCATCATGACTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACAAATATCTTACTTAACTCTGAGTGGGAGCCAAGTGTTTCTGACTTTGGCACAGCTAGACTCCTCCAACATGATTCATCCAATCAAACTATAGCCGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCCTACACAATGGTTGTGAGTGAAAAGTGTGATGTCTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGAAAGCATCCTAAGGAAATATTGTCATCACTTCAATCAACATCAAATCATGACATAGCACTATGTGAAGTACTGGACCAACGCCTCCCACTGCCAAATATGTCAGTTTTAATTGACATAGTTCATGTTGCCATGGTAGCATTTGCATGCTTAAATCCCAATCCTAGCTCTCGGCCAACAATGAAACATGTGTCACAATGTTTTCTTACTCGATTAACTCTACTAAGCATTCCTTTACATGAAATTTCTGTGCAGCAACTCATGAGTCAAGAACTCAAGCACCATTTAGAATTTTGA 678 0.4012 MFLIYQYMEKGSLFSVLYDDAEAMELDWRKRVDIVKGIAHALSYLHHDCNPPIVHRDIATTNILLNSEWEPSVSDFGTARLLQHDSSNQTIAAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGKHPKEILSSLQSTSNHDIALCEVLDQRLPLPNMSVLIDIVHVAMVAFACLNPNPSSRPTMKHVSQCFLTRLTLLSIPLHEISVQQLMSQELKHHLEF. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00594 225 Gene3D Transferase(Phosphotransferase) domain 1 1 224 - -
Seca1g00594 225 PANTHER LEUCINE RICH REPEAT KINASE 2 1 197 - -
Seca1g00594 225 PIRSF ILK 1 202 - -
Seca1g00594 225 ProSitePatterns Tyrosine protein kinases specific active-site signature. 53 65 IPR008266 GO:0004672|GO:0006468
Seca1g00594 225 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00594 225 SMART tyrkin_6 1 195 IPR020635 GO:0004713|GO:0006468
Seca1g00594 225 FunFam MDIS1-interacting receptor like kinase 2 8 201 - -
Seca1g00594 225 Pfam Protein kinase domain 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00594 225 SUPERFAMILY Protein kinase-like (PK-like) 2 194 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00594 Seca-Chr1 7106886 7108553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00594 2 196 Receptor kinase-like Gene Family AT5G49660 41.951 9.54e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00594 Pkinase 2.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00594 - - ccaj:109796569 368.622