Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00579 ATGGATCTTCTTGGATTTCTTCTTCTGGGATTTTTCTCCTTGGTGTCACATGTAAAAGGGTATGGTGGGGGTTGGATCAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACCTATATAGCCAAGGTTATGGAACTAATACAGCAGCACTGAGCACTGCCCTGTTCAACAATGGCTTAAGCTGTGGTGCATGTTTTGAAATTAAATGTGTGAATGACCCACAATGGTGTCTTCCTGGCTCTATTGTAGTTACTGCCACTAATTTTTGCCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCACAACCTATTTTCCAGCACATTGCTCAATATAAGGCTGGGATTGTACCTGTAGCATACAGAAGGTAA 420 0.4429 MDLLGFLLLGFFSLVSHVKGYGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVAYRR. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00579 139 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Seca1g00579 139 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Seca1g00579 139 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Seca1g00579 139 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Seca1g00579 139 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Seca1g00579 139 Pfam Lytic transglycolase 60 137 IPR009009 -
Seca1g00579 139 PANTHER EXPANSIN-A15 10 139 IPR002963 GO:0009664
Seca1g00579 139 SUPERFAMILY Barwin-like endoglucanases 9 139 IPR036908 -
Seca1g00579 139 CDD DPBB_EXPA_N 24 139 - -
Seca1g00579 139 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 139 IPR007112 -
Seca1g00579 139 Gene3D - 12 139 IPR036908 -
Seca1g00579 139 SMART dpbb_1 60 137 IPR007112 -
Seca1g00579 139 FunFam Expansin 15 139 - -
Seca1g00579 139 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Seca1g00579 139 PRINTS Expansin/Lol pI family signature 130 139 IPR007118 GO:0005576
Seca1g00579 139 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Seca1g00579 139 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00579 Seca-Chr1 6974053 6975938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00579 1 139 Expansin Gene Family AT1G69530 77.181 7.99e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00579 K20628 - gmx:100791784 269.24