Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00574 ATGGGATCAGTGGAGAATGTATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGATTTAGATTTCATCCAACAGATGAAGAACTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAGCAATTGCTGAAGTTAATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGTTTTGCTAATATGGGTGAAACAGAATGGTACTTTTTTAATGTGAGGGATAGAAAATACCCGACTGGTTTAAGGACAAATAGAGCCACTGATGCTGGCTACTGGAAGGCCACAGGCAAAGATAGGGAGATATTCGCGACAAATGCATTGATTGGGGTGAAGAAAACACTAGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGGAAAAACCAACTGGATAATGCATGAATATAGATTGGAGGGTAAAAATTCTGAATATAATCTTGCTAGGCTTGGAAAGGTATTAACTTTTTTTTCTCTAGAATGGGTTATTAGCAAAGTATTTGAAAAGAGTTCTTGTGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTGTAGGTGATTTGTCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATACTAAACCAACCCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACAATATCCTGATTATTCTCTGCCTCAAGAACAACAAAAGTTAAGGATTCTAACGGAATATCTTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACATACTTTAATGTTGATATCTCCCCTGTAACAACCAACAGTGACATGTCTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAGCTTCTACATGGCCGGTGGACATTGATTGCTTGTGGAATTACTAA 1098 0.3871 MGSVENVSRPRMEDQQLKLPPGFRFHPTDEELINDYLVKKVVDNSFCAIAIAEVNLNKCEPWDLPGFANMGETEWYFFNVRDRKYPTGLRTNRATDAGYWKATGKDREIFATNALIGVKKTLVFYKGRAPKGGKTNWIMHEYRLEGKNSEYNLARLGKVLTFFSLEWVISKVFEKSSCVKKMHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTVGDLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYTKPTPAFSNHSTMIAQQIGQPQYPDYSLPQEQQKLRILTEYLGSSLQHIQKIDFSLGTYFNVDISPVTTNSDMSQRWFGNQEHASASTWPVDIDCLWNY. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00574 365 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Seca1g00574 365 ProSiteProfiles NAC domain profile. 19 175 IPR003441 GO:0003677|GO:0006355
Seca1g00574 365 SUPERFAMILY NAC domain 15 175 IPR036093 GO:0003677|GO:0006355
Seca1g00574 365 Gene3D NAC domain 28 179 IPR036093 GO:0003677|GO:0006355
Seca1g00574 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 274 - -
Seca1g00574 365 FunFam NAC domain-containing protein 100-like 28 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00574 Seca-Chr1 6890212 6894550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00574 17 365 NAC Transcription Factor Family AT5G07680 45.584 3.41e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00574 NAM 5.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00574 - - gmx:100782172 441.039