Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00573 ATGAGATCAGTGGGGAATGTGTCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTACCTATAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGTTATAGCAATTGCTGAAGTTTATTTGAACAAGTGTGAGCCATGGGATTTTCCTGGTGAGTGTTTATAG 210 0.3905 MRSVGNVSRPRMEDQQLKLPPTYRFHPTDEELINDYLVKKVVDNSFCVIAIAEVYLNKCEPWDFPGECL. 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00573 69 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 66 - -
Seca1g00573 69 Gene3D NAC domain 28 69 IPR036093 GO:0003677|GO:0006355
Seca1g00573 69 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g00573 69 SUPERFAMILY NAC domain 15 67 IPR036093 GO:0003677|GO:0006355
Seca1g00573 69 ProSiteProfiles NAC domain profile. 19 69 IPR003441 GO:0003677|GO:0006355
Seca1g00573 69 Pfam No apical meristem (NAM) protein 20 67 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00573 Seca-Chr1 6889121 6889330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00573 9 65 NAC Transcription Factor Family AT3G15170 61.404 3.21e-21 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00573 NAM 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00573 - - gmx:100782172 102.064