Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00572 ATGATAGTGTTCTCTATCAGATGTCAGAACATACGAAATGAAATTGATAGGTTCTCTTTTGTCCTATTTTGTCTTTCACTTGCATCTTTGATGAACCATATACAAGATTTTACTGCAGGTATGGGATCAGTGGAGAATGTATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGATTTAGATTTCATCCAACAGATGAAGAACTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAGCAATTGCTGAAGTTAATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGTTTTGCTAATATGGGTGAAACAGAATGGTACTTTTTTAATGTGAGGGATAGAAAATACCCGACTGGTTTAAGGACAAATAGAGCCACTGATGCTGGCTACTGGAAGGCCACAGGCAAAGATAGGGAGATATTCGCGACAAATGCATTGATTGGGAGAGATTGGGTTATTAGCAAAGTATTTGAAAAGAGTACTTGTATAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGACGGATTTTCCTCCATACAACAACATAACAAGAACAACTGCAGGTGATTTGTCTCAATTGATCAACTTCTCCAATCCAAATCAAATGGAGGATCATAGAGCAAAAGATGACATTGTTGATAGCATGGAAGCTCCTATCTTAGCCATTCAATCTTCAGGACCCTACGATATTTCTGCTTATGCTAAACCAAACCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCAAAGTATCCTGCTTATTCTCTGCCTCAAGAACAACCAAAGTTAAGGATGCTAGCGGGAAATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACAGACTTTAATACTGATATCTCCCCTGTAACAACCAACAGTGACACTTTTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAGCTTCTACATGGTCGGTGGATATTGATTACTTGTGGAATTACTAA 1077 0.389 MIVFSIRCQNIRNEIDRFSFVLFCLSLASLMNHIQDFTAGMGSVENVSRPRMEDQQLKLPPGFRFHPTDEELINDYLVKKVVDNSFCAIAIAEVNLNKCEPWDLPGFANMGETEWYFFNVRDRKYPTGLRTNRATDAGYWKATGKDREIFATNALIGRDWVISKVFEKSTCIKKMHVPNFGRFNTFGEEPSPPSQLLPLTDFPPYNNITRTTAGDLSQLINFSNPNQMEDHRAKDDIVDSMEAPILAIQSSGPYDISAYAKPNPAFSNHSTMIAQQIGQPKYPAYSLPQEQPKLRMLAGNPGSSLQHIQKIDFSLGTDFNTDISPVTTNSDTFQRWFGNQEHASASTWSVDIDYLWNY. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00572 358 SUPERFAMILY NAC domain 55 159 IPR036093 GO:0003677|GO:0006355
Seca1g00572 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 56 157 - -
Seca1g00572 358 Gene3D NAC domain 68 170 IPR036093 GO:0003677|GO:0006355
Seca1g00572 358 ProSiteProfiles NAC domain profile. 59 211 IPR003441 GO:0003677|GO:0006355
Seca1g00572 358 Pfam No apical meristem (NAM) protein 60 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00572 Seca-Chr1 6873038 6874440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00572 57 358 NAC Transcription Factor Family AT5G07680 38.506 1.48e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00572 NAM 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00572 - - gmx:100782172 364.385