LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00571	ATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTACAGCTGATTTGTCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATACTAAACCAACCCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACTGTATCCTGATTTTTCTCTGCCTCAAGAACAACCAAAGTTAAGGATTCTAACGGAATATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCAGAACATACTTTAATGTTGATATCTCCCCTGTAACAACCAACAGTGACATGTTTCAAAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCATTCTGTGCTATAGCAATTGCTGAAGTTGATTTGAACAAATTGGAGGGTAAAAATTCTGAATATAATCTCGCTAGACTTGATAAGAGAGAATGGGTTATTATCAAAGTATTTGAAAAGAGTTCTTGTGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTGTAGGTGATTTGTCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATACTAAACCAACCCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACAATATCCTGATTATTCTCTGCCTCAAGAACAACAAAAGTTAAGGATTCTAACGGAATATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACATACTTTAATGTTGATATCTCCCCTGTAACAACCAACAGTGACATGTCTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAGCTTCTACATGGCCGGTGGACATTGATTGCTTGTGGAATTACTAA	1236	0.3835	MHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTTADLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYTKPTPAFSNHSTMIAQQIGQPLYPDFSLPQEQPKLRILTEYPGSSLQHIQKIDFSLRTYFNVDISPVTTNSDMFQRFHPTDEELINDYLVKKVVDNSFCAIAIAEVDLNKLEGKNSEYNLARLDKREWVIIKVFEKSSCVKKMHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTVGDLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYTKPTPAFSNHSTMIAQQIGQPQYPDYSLPQEQQKLRILTEYPGSSLQHIQKIDFSLGTYFNVDISPVTTNSDMSQRWFGNQEHASASTWPVDIDCLWNY.	412

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00571	411	SUPERFAMILY	NAC domain	160	197	IPR036093	GO:0003677\|GO:0006355
	Seca1g00571	411	MobiDBLite	consensus disorder prediction	1	20	-	-
	Seca1g00571	411	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	161	197	-	-
	Seca1g00571	411	Pfam	No apical meristem (NAM) protein	161	216	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00571	Seca-Chr1	6867826	6870536	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00571	195	411	NAC Transcription Factor Family	AT5G61430	29.091	8.02e-15	72.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00571	-		-	gmx:100782172	189.504

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