Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00571 ATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTACAGCTGATTTGTCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATACTAAACCAACCCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACTGTATCCTGATTTTTCTCTGCCTCAAGAACAACCAAAGTTAAGGATTCTAACGGAATATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCAGAACATACTTTAATGTTGATATCTCCCCTGTAACAACCAACAGTGACATGTTTCAAAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCATTCTGTGCTATAGCAATTGCTGAAGTTGATTTGAACAAATTGGAGGGTAAAAATTCTGAATATAATCTCGCTAGACTTGATAAGAGAGAATGGGTTATTATCAAAGTATTTGAAAAGAGTTCTTGTGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTGTAGGTGATTTGTCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATACTAAACCAACCCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACAATATCCTGATTATTCTCTGCCTCAAGAACAACAAAAGTTAAGGATTCTAACGGAATATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACATACTTTAATGTTGATATCTCCCCTGTAACAACCAACAGTGACATGTCTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAGCTTCTACATGGCCGGTGGACATTGATTGCTTGTGGAATTACTAA 1236 0.3835 MHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTTADLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYTKPTPAFSNHSTMIAQQIGQPLYPDFSLPQEQPKLRILTEYPGSSLQHIQKIDFSLRTYFNVDISPVTTNSDMFQRFHPTDEELINDYLVKKVVDNSFCAIAIAEVDLNKLEGKNSEYNLARLDKREWVIIKVFEKSSCVKKMHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTVGDLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYTKPTPAFSNHSTMIAQQIGQPQYPDYSLPQEQQKLRILTEYPGSSLQHIQKIDFSLGTYFNVDISPVTTNSDMSQRWFGNQEHASASTWPVDIDCLWNY. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00571 411 SUPERFAMILY NAC domain 160 197 IPR036093 GO:0003677|GO:0006355
Seca1g00571 411 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g00571 411 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 161 197 - -
Seca1g00571 411 Pfam No apical meristem (NAM) protein 161 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00571 Seca-Chr1 6867826 6870536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00571 195 411 NAC Transcription Factor Family AT5G61430 29.091 8.02e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00571 - - gmx:100782172 189.504