Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00570 ATGAAGCACGATTCTGCTAAAAGGCCCGAATTTAAGGATTTCAGGATGAGATCACTGGGGAATGTGTCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTACCTATAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGTTATAGCAATTGCTGAAGTTTATTTGAACAAGTATGAGCCATGGGATTTTCCTGGTGAGTGTTTATAG 255 0.3922 MKHDSAKRPEFKDFRMRSLGNVSRPRMEDQQLKLPPTYRFHPTDEELINDYLVKKVVDNSFCVIAIAEVYLNKYEPWDFPGECL. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00570 84 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 81 - -
Seca1g00570 84 ProSiteProfiles NAC domain profile. 34 84 IPR003441 GO:0003677|GO:0006355
Seca1g00570 84 Pfam No apical meristem (NAM) protein 35 82 IPR003441 GO:0003677|GO:0006355
Seca1g00570 84 SUPERFAMILY NAC domain 30 82 IPR036093 GO:0003677|GO:0006355
Seca1g00570 84 Gene3D NAC domain 43 84 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00570 Seca-Chr1 6866741 6867329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00570 24 80 NAC Transcription Factor Family AT3G15170 61.404 2.56e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00570 NAM 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00570 - - gmx:100790888 95.9005