Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00569 ATGGGATCAGTGGAGAATGTATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGATTTAGATTTCATCCAACAGATGAAGAACTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAGCAATTGCTGAAGTTAATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGTTTTGCTAATATGGGTGAAACAGAATGGTACTTTTTTAATGTGAGGGATAGAAAATACCCGACTGGTTTAAGGACAAATAGAGCCACTGATGCTGGCTACTGGAAGGCCACATGCAAAGATAGGGAGATATTCGCGACAAATGCATTGATTGGGGTGAAGAAAACACTAGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGGAAAAACCAACTGGATAATGCATGAATATAGATTGGAGGGTAAAAATTCTGAATATAATCTTACTAGGCTTGGAAAGAGAGATTGGGTTATTAGCAAAGTATTTGAAAAGAGTACTTGTATAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGACGGATTTTCCTCCATACAACAACATAACAAGAACAACTGCGGGTGATTTGTCTCAATTGGTCAACTTCTCCAATCCAAATCAAATGGAGGATCATAGAGCAAAAGATGACATTGTTGATAGCATGGAAGCTCCTATCTTAGCCATTCAATCTTCAGGACCCTACGATATTTCTGCTTATGCTAAACCAAACCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCAAAGTATCCTGCTTATTCTCTGCCTCAAGAACAACCAAAGTTAAGGATGCTAGCGGGAAATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACAGACTTTAATGCTGATATCTCCCCTGTAACAACCAACAGTGACACTTTTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAGCTTCTACATGGTCGGTGGATATTGATTACTTGTGGAATTACTAA 1080 0.3926 MGSVENVSRPRMEDQQLKLPPGFRFHPTDEELINDYLVKKVVDNSFCAIAIAEVNLNKCEPWDLPGFANMGETEWYFFNVRDRKYPTGLRTNRATDAGYWKATCKDREIFATNALIGVKKTLVFYKGRAPKGGKTNWIMHEYRLEGKNSEYNLTRLGKRDWVISKVFEKSTCIKKMHVPNFGRFNTFGEEPSPPSQLLPLTDFPPYNNITRTTAGDLSQLVNFSNPNQMEDHRAKDDIVDSMEAPILAIQSSGPYDISAYAKPNPAFSNHSTMIAQQIGQPKYPAYSLPQEQPKLRMLAGNPGSSLQHIQKIDFSLGTDFNADISPVTTNSDTFQRWFGNQEHASASTWSVDIDYLWNY. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00569 359 Gene3D NAC domain 28 173 IPR036093 GO:0003677|GO:0006355
Seca1g00569 359 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Seca1g00569 359 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Seca1g00569 359 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Seca1g00569 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 261 - -
Seca1g00569 359 FunFam NAC domain-containing protein 100-like 28 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00569 Seca-Chr1 6850602 6851884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00569 17 359 NAC Transcription Factor Family AT5G07680 46.110 5.11e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00569 NAM 2.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00569 - - gmx:100782172 441.039