Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00567 ATGAGATCAGTGGGGAATGTGTCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTACCTATAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTATAAAGGTTGTTGACAACTCCTTCTGTGTTATAGCAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTGGGATGAGATCGGTGGGGAATGTTTCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTAGCTTTAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGTTATAGCAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATGGAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTTCTTATGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTGCAGCTGATTTGTCTCAATTGATCAATTTCTCCTGTCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTATCAATCTTTAGGACCCTATGATATTTCCCCTTATGCTAAACCAACCCTTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACAGTATCCTGATTATTCTCTGCCTCATGAACAACCAAAGTTAAGGATTCTAACGGAATATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACACACTTTAATGTTGACATCTCCCCTGTAACAACCAACAGTGACATGTTTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAGCTTCTACAGGGCCGGTGGACATTGAATGCTTGTGGAATTACTAA 990 0.399 MRSVGNVSRPRMEDQQLKLPPTYRFHPTDEELINDYLVIKVVDNSFCVIAIAEVDLNKCEPWDFPGMRSVGNVSRPRMEDQQLKLPPSFRFHPTDEELINDYLVKKVVDNSFCVIAIAEVDLNKCEPWREWVISRVFEKSSYVKKMHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTAADLSQLINFSCPNQMEDQRAQDDIVDFMEAPILAYQSLGPYDISPYAKPTLAFSNHSTMIAQQIGQPQYPDYSLPHEQPKLRILTEYPGSSLQHIQKIDFSLGTHFNVDISPVTTNSDMFQRWFGNQEHASASTGPVDIECLWNY. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00567 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 71 - -
Seca1g00567 329 Gene3D NAC domain 28 81 IPR036093 GO:0003677|GO:0006355
Seca1g00567 329 Gene3D NAC domain 94 144 IPR036093 GO:0003677|GO:0006355
Seca1g00567 329 SUPERFAMILY NAC domain 81 129 IPR036093 GO:0003677|GO:0006355
Seca1g00567 329 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g00567 329 Pfam No apical meristem (NAM) protein 86 131 IPR003441 GO:0003677|GO:0006355
Seca1g00567 329 Pfam No apical meristem (NAM) protein 20 68 IPR003441 GO:0003677|GO:0006355
Seca1g00567 329 SUPERFAMILY NAC domain 15 70 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00567 Seca-Chr1 6843344 6846666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00567 17 329 NAC Transcription Factor Family AT5G07680 28.205 2.24e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00567 NAM 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00567 - - gmx:100782172 262.692