Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00565 ATGAGATCAGTGGGGAATGTGTCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTACCTATAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGTTATAGCAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTGGCCACGGGCAAAGACAGGGAGATATTCGCGGCAAATGCATTGATTGGGGTGAAAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTTCTTATGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTCGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTGCAGCTGATTTGTCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATGCTAAACCAACCCCTGCATTCTCCCACCATTCCACAATGATTGCACAACAATTTGGCCAACCACAGTATCCTGATTATTCTCTGCCTCAAGAACAACCAAAGTTAAGGATTCTAACAGATTATCCTTGA 684 0.4094 MRSVGNVSRPRMEDQQLKLPPTYRFHPTDEELINDYLVKKVVDNSFCVIAIAEVDLNKCEPWDFPGHGQRQGDIRGKCIDWGEREWVISRVFEKSSYVKKMHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTAADLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYAKPTPAFSHHSTMIAQQFGQPQYPDYSLPQEQPKLRILTDYP. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00565 227 Pfam No apical meristem (NAM) protein 20 71 IPR003441 GO:0003677|GO:0006355
Seca1g00565 227 Gene3D NAC domain 28 81 IPR036093 GO:0003677|GO:0006355
Seca1g00565 227 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 86 - -
Seca1g00565 227 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g00565 227 SUPERFAMILY NAC domain 15 68 IPR036093 GO:0003677|GO:0006355
Seca1g00565 227 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00565 Seca-Chr1 6840578 6841690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00565 8 86 NAC Transcription Factor Family AT3G15170 50.633 2.17e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00565 NAM 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00565 - - gmx:100790888 127.102