Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00564 ATGAGATCAGTGGGGAATGTATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTAGCTTTAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGTTATAGCAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTGGGATGAGATCAGTGGGGAATATATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTAGCTTTAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGTTATAGGAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATAG 384 0.3906 MRSVGNVSRPRMEDQQLKLPPSFRFHPTDEELINDYLVKKVVDNSFCVIAIAEVDLNKCEPWDFPGMRSVGNISRPRMEDQQLKLPPSFRFHPTDEELINDYLVKKVVDNSFCVIGIAEVDLNKCEP. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00564 127 Gene3D NAC domain 28 82 IPR036093 GO:0003677|GO:0006355
Seca1g00564 127 SUPERFAMILY NAC domain 81 127 IPR036093 GO:0003677|GO:0006355
Seca1g00564 127 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g00564 127 SUPERFAMILY NAC domain 15 71 IPR036093 GO:0003677|GO:0006355
Seca1g00564 127 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 71 - -
Seca1g00564 127 Pfam No apical meristem (NAM) protein 86 127 IPR003441 GO:0003677|GO:0006355
Seca1g00564 127 Pfam No apical meristem (NAM) protein 20 68 IPR003441 GO:0003677|GO:0006355
Seca1g00564 127 ProSiteProfiles NAC domain profile. 19 66 IPR003441 GO:0003677|GO:0006355
Seca1g00564 127 ProSiteProfiles NAC domain profile. 85 127 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00564 Seca-Chr1 6837304 6839530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00564 8 90 NAC Transcription Factor Family AT3G15170 49.398 2.93e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00564 NAM 5.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00564 - - gmx:100782172 110.538