Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00562 ATGGAAGATCAACAGTTGAAACTGCCACCTAGCTTTAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTTCTTATGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTGCAGCTGATTTGTCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAAAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATGCTAAACCAACCCATGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACAGTATCCTGATTATTCTATGCCTCAAGAACAACCAAAGTTAAGGATTCTAACGGAATATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACATACTTTAATGTTGATATCTCCCCCGTAACAACCAACAGTGACATGTTTCAAAGGTGGTTTGGGAATCAAGAACATGCATTAGCTTCTACAGGGCCGGTGGACATTGATTGCTTGTGGAATTACTAA 693 0.3882 MEDQQLKLPPSFRFHPTDEELINDYLVKKREWVISRVFEKSSYVKKMHVPNFGRFNTFGEEPSPPSQLLPLADFSPYNNITRTTAADLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYAKPTHAFSNHSTMIAQQIGQPQYPDYSMPQEQPKLRILTEYPGSSLQHIQKIDFSLGTYFNVDISPVTTNSDMFQRWFGNQEHALASTGPVDIDCLWNY. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00562 230 SUPERFAMILY NAC domain 5 31 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00562 Seca-Chr1 6834046 6835293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00562 29 230 NAC Transcription Factor Family AT5G61430 26.961 9.70e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00562 NAM 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00562 - - gmx:100782172 183.341