Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00556 ATGGAAGGATCACAAGGTGTGAGGAAAGGCGCATGGAGTAATTTTGAAGATGATCTTCTCAAAGCATGTGTCCAACAATATGGGGAGGGAAAATGGCACCTAGTTCCTCAACGATCAGGGTTGAATAGATGCCTCAAGAGTTGTAGATTGAGATGGTTGAATTACCTAAAACCAAATATCAAGAGGGGAGATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCGCTGATAGCTGGAAGACTTCCTGGAAGAACTGCAAATGATGTGAAAAATTACTGGAACACTCACATGCGCAGTAAAGTAGTAGATCACTCACAGGCACATAGCAAGAAAGAAGAGACTGAAAGAGTGAAACCCCACGAAGTGATAAAACCTGTGCCTCGAACTTTGTCAAAAGCATCTTCAGGGAAACTCAATATTATTGCTAATTCTGCAGATCAGAGTGATAGTTGCAAAGTTAATATTAGCAGTGAAGGAGCTTCTTCATCAGGGAAGAATTGGTGGGAAACTTTGTTAGATCAGTTAGATGATGAGGACAACACCACTTTCTCCTTAGCTGAGGGAAATGACCTTGGGGAGGATGATTCAAAAGTACTTTGTGACTTTCTTACAGAAGATCAAACTTGGAGTGATTTCCTCTTTGATGTACACACAAAACCCTAA 693 0.4055 MEGSQGVRKGAWSNFEDDLLKACVQQYGEGKWHLVPQRSGLNRCLKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHMRSKVVDHSQAHSKKEETERVKPHEVIKPVPRTLSKASSGKLNIIANSADQSDSCKVNISSEGASSSGKNWWETLLDQLDDEDNTTFSLAEGNDLGEDDSKVLCDFLTEDQTWSDFLFDVHTKP. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00556 230 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Seca1g00556 230 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Seca1g00556 230 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Seca1g00556 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Seca1g00556 230 SMART sant 61 109 IPR001005 -
Seca1g00556 230 SMART sant 8 58 IPR001005 -
Seca1g00556 230 Gene3D - 63 134 - -
Seca1g00556 230 Gene3D - 3 62 - -
Seca1g00556 230 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Seca1g00556 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 168 - -
Seca1g00556 230 CDD SANT 11 56 IPR001005 -
Seca1g00556 230 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Seca1g00556 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Seca1g00556 230 CDD SANT 65 107 IPR001005 -
Seca1g00556 230 FunFam Transcription factor MYB113 64 135 - -
Seca1g00556 230 FunFam Myb transcription factor 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00556 Seca-Chr1 6640243 6642148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00556 2 152 MYB Transcription Factor Family AT1G66370 56.522 4.83e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g00556 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00556 - K16166 gmx:100778957 288.5