Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00555 ATGGAAGGATCACAAGGTGTGAGAAAACGTGCATGGAGTAAATTTGAAGATGACCTTCTCAAAGCATGTGTCCAACAATATGGGGAGGGAAAATGGAACCTAGTTCCTCAAAGAACAGGGTTGAATAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTACCTAAAACCAAATATCAAGAGGGGACATTTTACTGAGGATGAGGTTGATTTGATGATCAGATTACATAAGCTTTTGGGAAACAAATGGTCCCTGATTGCTGGAAGACTTCCGGGAAGAACTCCAAATGATGTGAAAAATTACTGGAACACCCACATGCGCAGTAAAGTAGACTCAGAGTCAATGAGGAGCGACCAAGTCCAAGAGGCTGAAAGAAGTACAGTGAAACCTCACGAAGTGATAAAGCCTTTGCCTCGAACTTTGTCAAAAGCATCTTCACAATCACAAGGGAAACTCAATACCTCTCAGAGTAGTAGTTGCAATTTGCAAAGTTAG 498 0.4177 MEGSQGVRKRAWSKFEDDLLKACVQQYGEGKWNLVPQRTGLNRCRKSCRLRWLNYLKPNIKRGHFTEDEVDLMIRLHKLLGNKWSLIAGRLPGRTPNDVKNYWNTHMRSKVDSESMRSDQVQEAERSTVKPHEVIKPLPRTLSKASSQSQGKLNTSQSSSCNLQS. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00555 165 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Seca1g00555 165 SMART sant 8 58 IPR001005 -
Seca1g00555 165 SMART sant 61 109 IPR001005 -
Seca1g00555 165 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Seca1g00555 165 FunFam Myb transcription factor 9 61 - -
Seca1g00555 165 CDD SANT 11 56 IPR001005 -
Seca1g00555 165 Gene3D - 63 136 - -
Seca1g00555 165 MobiDBLite consensus disorder prediction 110 133 - -
Seca1g00555 165 MobiDBLite consensus disorder prediction 110 165 - -
Seca1g00555 165 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Seca1g00555 165 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Seca1g00555 165 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Seca1g00555 165 CDD SANT 65 107 IPR001005 -
Seca1g00555 165 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 144 - -
Seca1g00555 165 MobiDBLite consensus disorder prediction 141 165 - -
Seca1g00555 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Seca1g00555 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Seca1g00555 165 Gene3D - 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00555 Seca-Chr1 6628484 6631781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00555 2 147 MYB Transcription Factor Family AT1G66370 59.333 5.88e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g00555 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00555 - K09422 gmx:100780023 238.81