Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00550 ATGGCTGCTTGCATATTCACTGTGTCACAGAATGGAACTGGTGATTTCCAAACGGTGCAGGAAGCTATCGACGCCGTGCCGCTCGGCAACACTCGCCGGACGGTGATTCGGGTTTCGCCGGGAATCTACGGACAGCCGGTGTATGTGCCCAAGACCAAAAATTTCATCACTCTTGCTGGTCTGCGCCCTGAGGATACTGTGCTTACTTGGAACAACACTGCCACCAGAATCGATCACCACCAGATAGGGACTGGCACGTTTGGTTGTGGAAGTACCATTGTGGAAGGAGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCTGCTCCTCAGGTAATGCTCTGGAATGGTTCAGGGCAAGCAGTGGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTCGGATGGCAGGACACACTGTACTTACATTACGGCAAACAATATTTGAAGGACTGCTATATTGAAGGAAGTGTAGACTTTATCTTTGGCAATAGCACTGCTCTTTTGGAGCACTGTCATATCCATTGCAAGTCTCAAGGGTTCATAACTGCGCAGGGTAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGAAAGTTCATATGCATATCTCGGACGACCATGGGGACCTTTTGGAAGGGTAGTCTTTGCATACACCTATATGGATCCATGTGTAAGGCATGTTGGCTGGGATAACTGGGGTAAAGTTGAGAATGAAAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCACCCAAACGAGCAACATGGTCTAGAGAATTGGTGGATGAAGAAGCAGAGCAGTTCCTCATGCATCCTTTCATTGATCCAGAACCAGATAGACCTTGGCTTTCTCTAAGAATGGGATTAAGGATTCCATATTCTGCTTAG 954 0.4602 MAACIFTVSQNGTGDFQTVQEAIDAVPLGNTRRTVIRVSPGIYGQPVYVPKTKNFITLAGLRPEDTVLTWNNTATRIDHHQIGTGTFGCGSTIVEGEDFIAENITFENSAPQVMLWNGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQGRKSSQETTGYVFLRCVITGNGESSYAYLGRPWGPFGRVVFAYTYMDPCVRHVGWDNWGKVENERSACFYEYRCFGPGCCPPKRATWSRELVDEEAEQFLMHPFIDPEPDRPWLSLRMGLRIPYSA. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00550 317 ProSitePatterns Pectinesterase signature 2. 160 169 IPR033131 -
Seca1g00550 317 Gene3D - 3 308 IPR012334 -
Seca1g00550 317 FunFam Pectinesterase 2 310 - -
Seca1g00550 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 299 - -
Seca1g00550 317 Pfam Pectinesterase 7 297 IPR000070 GO:0030599|GO:0042545
Seca1g00550 317 SUPERFAMILY Pectin lyase-like 3 303 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00550 Seca-Chr1 6577341 6581184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00550 5 308 Carbohydrate Esterase AT5G47500 38.111 1.64e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00550 K01051 - gmx:100786786 602.438