Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00547 ATGTCAAGGAAGAGAAAGGTTGCTGAAGCTGTTGAAGAGAGTAATCCATCTGAGGCAACGATGGCATGGGATGAGGTGATGAAGGAAGCTGCTGCAATAGGAAGTACCAGAAGATCCAGAAAGAAATTTGTTGGGGTCAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAAAAGATAAGGGTGTGGTTAGGAACTTTTGATACAGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCTGCTTGCTTGCTACGTGATTATACCATAAGCAACACTGAGTTTTTTAGTAATAGTGCACAAATTGATTACATCACAAGTAGTTTTGAATCATGTTTAACTGAGAAAGATCATAACTTGAGGGAAAAAGAAATGGATATGGAATGTAATTTCAGCAGTGTGACACAAACATCAAGTGGTGACTGCAAAGAAAGCACTGATTTGAGTGACCATGATTTTCAATTCTTGGACAATGTTGTTCCATTGGATCATTACTATTGTCCTTTTGAGATTGCTGAAGAGATTGAGGAGCCATTGGAGCCAGAGGTCTATGATGATGAGTCTTCAATACTAAGAGCTGCAATGAAGAGAATGAAATATGAGAGGAAGTTCTCAGCTTCCCTCTATGCCTTTAATGGGATACCTGAATGCTTGAAGTTGAAACTAGAATCAGGTAAGAAAAAGGGAAGTGGGGTTTCTAATCAAATAACTAACCTTAAGATGGCCTGTAGCAAAAACAAAATTGAGGCTAATAAGAAGGACACAGAATACATGGTAGAAATGGATAAGAAAGAGGAAGAAAACCCACAAACATCAACTTGCATGGATTCCTTTTCCATCAAGTATTGA 861 0.3902 MSRKRKVAEAVEESNPSEATMAWDEVMKEAAAIGSTRRSRKKFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRDYTISNTEFFSNSAQIDYITSSFESCLTEKDHNLREKEMDMECNFSSVTQTSSGDCKESTDLSDHDFQFLDNVVPLDHYYCPFEIAEEIEEPLEPEVYDDESSILRAAMKRMKYERKFSASLYAFNGIPECLKLKLESGKKKGSGVSNQITNLKMACSKNKIEANKKDTEYMVEMDKKEEENPQTSTCMDSFSIKY. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00547 286 FunFam ethylene-responsive transcription factor RAP2-11 41 101 - -
Seca1g00547 286 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Seca1g00547 286 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Seca1g00547 286 ProSiteProfiles AP2/ERF domain profile. 42 100 IPR001471 GO:0003700|GO:0006355
Seca1g00547 286 SMART rav1_2 42 104 IPR001471 GO:0003700|GO:0006355
Seca1g00547 286 CDD AP2 41 90 IPR001471 GO:0003700|GO:0006355
Seca1g00547 286 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 209 - -
Seca1g00547 286 Pfam AP2 domain 42 87 IPR001471 GO:0003700|GO:0006355
Seca1g00547 286 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Seca1g00547 286 SUPERFAMILY DNA-binding domain 42 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00547 Seca-Chr1 6555033 6555988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00547 36 106 AP2-EREBP Transcription Factor Family AT5G19790 67.105 1.10e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g00547 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00547 K09286 - gmx:100796159 235.343