Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00546 ATGGATGGGCCAGCTGGTCGAGGTGGTGGTGCAGGCCTTGACATGTATCTGCCAAATTATAAATTGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAGGTGAAAATTGCGGAACATGTATTGACTGGTCATAAGGTTGCAATCAAGATTCTTAACCGTCGCAAGATAAAGAACATGGACATGGAAGAAAAAGTAAGAAGAGAAATCAAAATTCTCAGACTGTTCATGCACCCGCACATTATAAGACTTTATGAGGTTATCGAAACTCCAACTGACATTTATGTTGTCATGGAGTATGTGAAATCTGGAGAGCTTTTTGATTACATAGTAGAAAAGGGCAGGTTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGGGATCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTAAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCCAACTATGCTGCTCCTGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTGTGGAGCTGTGGTGTAATTTTATATGCCCTTCTTTGTGGCACCCTTCCTTTTGACGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGAGGAATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAAGAATGCTTGTGGTCGACCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACATGCATGGTTCCAAGCACGTCTTCCGCGTTATTTAGCTGTTCCACCACCAGATACAATGCTACAGGCAAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAATATGGGATTTGACCGGAATCAATTGATCGAATCTCTTCGCAACAGGATACAAAATGAGGGTACCGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAATCCCTGGAATCTGGTTTTAACCAAATGCAGCCAAGTGAAGTTGCTTCTTCAGTTGCTGGGCCCCGTTTTCCAAGCTTTATGGATTATCCAGGAGTTGGAGTGAGACCACAGTTAACTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGAAGTTTGGGCTGTTGAACTTGTTGCTGATGTACTTCTCTTTCATATGTGGACATGCACAGTTGCACACATAA 1266 0.4258 MDGPAGRGGGAGLDMYLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHAWFQARLPRYLAVPPPDTMLQAKKIDEEILQEVVNMGFDRNQLIESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQESLESGFNQMQPSEVASSVAGPRFPSFMDYPGVGVRPQLTVERKWALGLQKFGLLNLLLMYFSFICGHAQLHT. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00546 421 SUPERFAMILY Protein kinase-like (PK-like) 17 290 IPR011009 -
Seca1g00546 421 PANTHER SERINE/THREONINE KINASE 19 337 - -
Seca1g00546 421 SUPERFAMILY UBA-like 282 331 IPR009060 GO:0005515
Seca1g00546 421 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00546 421 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00546 421 Pfam UBA/TS-N domain 294 330 IPR015940 -
Seca1g00546 421 CDD UBA_SnRK1_plant 294 334 - -
Seca1g00546 421 SMART uba_6 295 332 IPR015940 -
Seca1g00546 421 CDD STKc_AMPK_alpha 17 272 - -
Seca1g00546 421 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Seca1g00546 421 Gene3D Transferase(Phosphotransferase) domain 1 12 348 - -
Seca1g00546 421 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Seca1g00546 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Seca1g00546 421 FunFam Non-specific serine/threonine protein kinase 13 99 - -
Seca1g00546 421 FunFam Non-specific serine/threonine protein kinase 11 350 - -
Seca1g00546 421 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00546 Seca-Chr1 6547314 6552556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00546 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 1.38e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca1g00546 Pkinase 3.6e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00546 K07198 - gmx:100796687 738.799