LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00541	ATGGGTTGTGTCAACTCCAAGAAAGCGGTTGCCGGAGCCGATTCTGCTTCGCCGGTGGGACCTTACGTTCACTCTAGCTCACGGAAAAGGAGCAATGGTTCTGGGCAATGCAGCATTGTTGTGGAGGCAGCACCACAACCACCACCACCACCAGCAACTGTGGTGGGCTCATCCTCCTCAAGAGCACATTCTGGGGTGCTGACCCAACAACAGCATTCGGGTCATGACCCGAAACCCGAGGAGTGGAAGAAGGGAAACTTGAGCCTGAGGCTTGGTTTGTCACATAGGTTTGTGGAAGCAGAACAGAATGCAGCTGGTTGGCCTGCTTGGCTCACCTCTGTTGCAGGAGAAGCCATTCATGGGTGGGTCCCTCTCAAAACAGATTCTTTTGAGAAATTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCACGTGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTGCGGTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAATAATTCTCCGCACACTTGACCACCCAAACATCATGAAATTGGAGGGTATAATCACATCACAACTATCAAAAAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCAGACATCAAGTTCAGTGACTCACAGATTAAGTGTTACATGAGGCAGCTATTAAGTGGACTTGAGCACTGTCATCTAAGAGGTATCATGCATAGAGACATTAAAGTATCCAATATATTAGTGAACAATGAAGGCATTCTCAAGATAGCAGATTTTGGATTAGCAAATACCATTAACCCAAATAGCAAACACCCTTTAACAAGTCGTGTAGTGACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCAGTGGATCTGTGGAGTATAGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCTATTCTCAAGGGAAGAACTGAGGTGGAACAATTACACAAAATTTTTAAGCTTTGTGGGTCTCCACCTGATGAGTTCTGGAAGAAGAATAAGCTTCCCCTTGCAACAATGTTTAAGCCTCAAACTAGTTATGAAAGTTCTCTTAGGGAGAGGTGTAAGGGTTTTCCTGGGACTGCTGTAAGCCTACTTGAGACTTTACTGTCCATTGATCCCCAAAAGCGTGGGACTGCATCCTCTGCACTTATGTCTGAGTATTTCAGCACCAAGCCATATTCTTGTAGTCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAAACCCGGGAAGATATGCGCAGGAAAAAGAATGGAGGTAAAGTGCGAGAGCGAGAGGCTGTAACATCAAGAAGGCAAAGACAAGGCCATAAAGTTCTGCAGGACCCTATCAATGTCAGTAAACCAGCTTTGAAAGAGGAAATGCAGAATGCTTCTCAAAATACTTATAGAGATGATGGTAAAGCACATCATACAAAAGGAAAACCAGGAGCTATGCACAAAGAGCAACAAAAGCCTTTATATGATGCAAAATCAGAGGCTGCCCAAATGATGAATGGTAGTAGTAATGGCTATAGTGTATACTCAGGACCAGCACCAGTCACAGGATCTAGTGGCTTTACATGGGCAAAAAGGAGAAAACCAGATACTTCATCCATACTATCAGATGGCTCAAGAAGCAAGATCAGTGCACTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACAAAACATGGGATACAAGTTTCAGAAAGAAAACATAATTACAACACAAGCCACCAAGATGAGACTTCCAATCATGTATTGCAAAAGCACCAGGCATATCATGGTCAATCATTTGATGTAGATGATACATACCATTCAAATCATTACATGGAATTTGATCTCTCAGAAAAAACGGATACTCTCATAAACACTCAGGGCTACAGAAAATATGGTGAGCCTGTGGAACAATCAATGCCAACAATGATCCAAACAAATAAAAACGATGAATTGTTGCATTGGAATGAAAATAATATGCGGCAATCTGTTCGTAGATCAAGGTTTGGAAGAGACAGATGA	2094	0.4293	MGCVNSKKAVAGADSASPVGPYVHSSSRKRSNGSGQCSIVVEAAPQPPPPPATVVGSSSSRAHSGVLTQQQHSGHDPKPEEWKKGNLSLRLGLSHRFVEAEQNAAGWPAWLTSVAGEAIHGWVPLKTDSFEKLDKIGQGTYSSVFQAREVETGRMVALKKVRFDNFQPESIRFMAREIIILRTLDHPNIMKLEGIITSQLSKSIYLVFEYMEHDLAGLVSSPDIKFSDSQIKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNEGILKIADFGLANTINPNSKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSIGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPDEFWKKNKLPLATMFKPQTSYESSLRERCKGFPGTAVSLLETLLSIDPQKRGTASSALMSEYFSTKPYSCSPSLLPKYPPSKEMDAKTREDMRRKKNGGKVREREAVTSRRQRQGHKVLQDPINVSKPALKEEMQNASQNTYRDDGKAHHTKGKPGAMHKEQQKPLYDAKSEAAQMMNGSSNGYSVYSGPAPVTGSSGFTWAKRRKPDTSSILSDGSRSKISALDPTFAKGTYDLTKHGIQVSERKHNYNTSHQDETSNHVLQKHQAYHGQSFDVDDTYHSNHYMEFDLSEKTDTLINTQGYRKYGEPVEQSMPTMIQTNKNDELLHWNENNMRQSVRRSRFGRDR.	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00541	697	SUPERFAMILY	Protein kinase-like (PK-like)	123	419	IPR011009	-
	Seca1g00541	697	Gene3D	Phosphorylase Kinase; domain 1	117	212	-	-
	Seca1g00541	697	MobiDBLite	consensus disorder prediction	1	83	-	-
	Seca1g00541	697	MobiDBLite	consensus disorder prediction	494	513	-	-
	Seca1g00541	697	Pfam	Protein kinase domain	130	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00541	697	FunFam	probable serine/threonine-protein kinase At1g54610	213	453	-	-
	Seca1g00541	697	MobiDBLite	consensus disorder prediction	433	468	-	-
	Seca1g00541	697	MobiDBLite	consensus disorder prediction	55	73	-	-
	Seca1g00541	697	PANTHER	CELL DIVISION PROTEIN KINASE	128	418	-	-
	Seca1g00541	697	ProSiteProfiles	Protein kinase domain profile.	130	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00541	697	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	250	262	IPR008271	GO:0004672\|GO:0006468
	Seca1g00541	697	FunFam	probable serine/threonine-protein kinase At1g54610	117	212	-	-
	Seca1g00541	697	ProSitePatterns	Protein kinases ATP-binding region signature.	136	159	IPR017441	GO:0005524
	Seca1g00541	697	SMART	serkin_6	130	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00541	697	MobiDBLite	consensus disorder prediction	425	513	-	-
	Seca1g00541	697	CDD	STKc_CDK9_like	130	414	-	-
	Seca1g00541	697	Gene3D	Transferase(Phosphotransferase) domain 1	213	453	-	-
	Seca1g00541	697	MobiDBLite	consensus disorder prediction	20	39	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00541	Seca-Chr1	6521694	6527671	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00541	122	471	Core Cell Cycle Gene Families	AT5G10270	45.753	1.17e-106	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca1g00541		Pkinase	2.6e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00541	-		-	lja:Lj1g3v2982400.1	1065.06