Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00539 ATGTCCCACCAACAGGCTTTAGCACAGGTTACAGCACAAGCTGTCCTAGCACAATCTCAGATGCACATGCAAGCTGATTACCAGCAATCTGCAGTAACAGCTCCCACTGAACCACTGGTAGAACAGCCATCTTTTACTATAAATGAAGCTTCGGAGCAGCAAGTAGTGGCATCTGTATCAGAACCTAGAAATGCTCAACTGGAAACATCAGAGCTTTCACAAGGTGATAAGAAATATCAACCATCTTCCCTGCCCATTGACAAACCTGCTGATGATGGCTACAACTGGCGTAAGTATGGACAGAAGCAGGTTAAAGGGAGTGAGTATCCACGGAGCTACTACAAGTGTACACATCTGAATTGTCCAGTGAAGAAAAAGGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAAAAGCCTCAGGGAAATAGGCGTATCAAAGATAATAGTGACTTGAATGGAAATACAAATGTTCAACCTAAGTCTGAATCAAACTCACAAGGTTGGTTTGAAAATGCAAACAAATTTAGTGAAAGCATGCCTGATAGTTCAGTGCCTGAGAGTGACCAGACCTCCAATCAAGGGGCTCCAAGGCAAATGCCTGGATCAAGTGAGAGTGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGGAGATGACAATGAGCCAAACCCTAAGAGAAGGAACACTGCTGATCTTGTGGTTTCTGAAGTACCTCTGTCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCAAGGAGTTACTACAAATGCACTAGTGCAGGATGCAATGTGCGTAAACATGTCGAGAGAGCCTCAACAGACCCCAAAGCTGTCATTACTACATATGAGGGAAAACATAATCATGATGTGCCTGCTGCTAGAAACAGCAGCCACAACACAGCTAGTAGTAATTCAATGCCATTAAAACCACATAACGCGGTCCCAGAGAAGCATCCTTTGCTTAAAGATATGGAGTTTGGAAACAGTGACCAGAGACCTGTACATTTACGCTTGAAAGAAGAGCAGATCATAGTATAA 1155 0.4364 MSHQQALAQVTAQAVLAQSQMHMQADYQQSAVTAPTEPLVEQPSFTINEASEQQVVASVSEPRNAQLETSELSQGDKKYQPSSLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQGNRRIKDNSDLNGNTNVQPKSESNSQGWFENANKFSESMPDSSVPESDQTSNQGAPRQMPGSSESEEVGDVDNREEGDDNEPNPKRRNTADLVVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTASSNSMPLKPHNAVPEKHPLLKDMEFGNSDQRPVHLRLKEEQIIV. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00539 384 FunFam WRKY transcription factor 33 257 323 - -
Seca1g00539 384 SUPERFAMILY WRKY DNA-binding domain 89 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 MobiDBLite consensus disorder prediction 326 349 - -
Seca1g00539 384 MobiDBLite consensus disorder prediction 140 155 - -
Seca1g00539 384 MobiDBLite consensus disorder prediction 140 241 - -
Seca1g00539 384 SMART WRKY_cls 270 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 SMART WRKY_cls 90 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 MobiDBLite consensus disorder prediction 57 80 - -
Seca1g00539 384 MobiDBLite consensus disorder prediction 57 95 - -
Seca1g00539 384 MobiDBLite consensus disorder prediction 332 348 - -
Seca1g00539 384 Pfam WRKY DNA -binding domain 91 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 Pfam WRKY DNA -binding domain 271 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 Coils Coil 384 384 - -
Seca1g00539 384 ProSiteProfiles WRKY domain profile. 91 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 345 IPR044810 GO:0003700
Seca1g00539 384 MobiDBLite consensus disorder prediction 156 210 - -
Seca1g00539 384 SUPERFAMILY WRKY DNA-binding domain 262 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 Gene3D WRKY domain 82 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 Gene3D WRKY domain 255 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 ProSiteProfiles WRKY domain profile. 265 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00539 384 FunFam WRKY transcription factor 78 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00539 Seca-Chr1 6489764 6494664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00539 1 382 WRKY Transcription Factor Family AT2G03340 55.330 4.89e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g00539 WRKY 6.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00539 - - gmx:100796679 679.478