Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00530 ATGGGTTCCTATTCCATAAATAAAGAGAACAATGTGGTGAGAGATGACAATGATACCCTCTCTGCCATGGTGCTTGGTGCCAATGTGGTCTTTCCTGCAGCACTTAACGCTGCAATTGAACTCAAACTATTTGAGATCATTGCCAAGGAAAGTGATGATGATGGTTTCATGTCAGCCTTTGAAATTGCTTCCAAGCTACCAACCAAACACTCTGATGTACCAAATAGGCTCGACCGTCTCCTGCGTTTGCTTGCTAGTTACTCTCTTCTCACTGTTTCCACTCGCACCAATGAGGATGGTAGCATAGTGAGAGTTTATGGGATCTCACCTTGTGGTAGATATTTCTTCCATGATGAAAATGGTGATGGTAATCTTGCTACATTCACATCATTCTTGTGTCACCGTGAATTGTTTGATGTGTGGCTAAATTTTAAGGAAGCAATTATTGATCCTGAGGTTGACCTATTCAAGAAAGTTCATGGAACATCTAAGTTTGAGTACTTTGGGAATGATCCAGAAACAAACCACATATTTAACATAGCAATGGCTGATATATGCACATCCCATATGAGAAGAATACTTGAAATATACACAGGATTTGAAGGAATATCAACTTTGGTTGATGTAGCAGGTGGAACTGGACATGGCCTCAAAATGATCATCTCCAAATACCCTTTAATTAAAGGGATTAATTTTGACCTCCCTCAAGTGATTCAAAATGCACCACCATTTATAGACCTTTTTATATTTTTCAGTTTCATTTACAAAATATTTAATCCAATTTTTTTTATGTTCTATTCAGGGATTGAGCATGTTGGAGGAAGCATGTTTGAAAGTATTCCACAAGGTGATGCCATAATATTAAAGGCTATATTGCATAACTGGTCAGATGAAAAATGTTTAGAAATTTTAAGCAATTGTCACAAAGCTTTACCAGAAAACGGGAAGGTCATTGTTGGGGAACTTATACTGCCTGAAGATCCTGAACCTACAGAAGAATATAAAATGCTTTCAATTCTTGATAACATCATGTTTATTACACCTGGTGGAAAGGAAAGAACTGCAAAACAGTATGAGGCTTTGGGCAAGCGCTCTGGATTTTCTAAGTTTCAAGTTGCATGTCGCGTTTTCTCAATTTTGGGTGTGATGGAGTTTTACAAATAA 1164 0.3763 MGSYSINKENNVVRDDNDTLSAMVLGANVVFPAALNAAIELKLFEIIAKESDDDGFMSAFEIASKLPTKHSDVPNRLDRLLRLLASYSLLTVSTRTNEDGSIVRVYGISPCGRYFFHDENGDGNLATFTSFLCHRELFDVWLNFKEAIIDPEVDLFKKVHGTSKFEYFGNDPETNHIFNIAMADICTSHMRRILEIYTGFEGISTLVDVAGGTGHGLKMIISKYPLIKGINFDLPQVIQNAPPFIDLFIFFSFIYKIFNPIFFMFYSGIEHVGGSMFESIPQGDAIILKAILHNWSDEKCLEILSNCHKALPENGKVIVGELILPEDPEPTEEYKMLSILDNIMFITPGGKERTAKQYEALGKRSGFSKFQVACRVFSILGVMEFYK. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00530 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 384 IPR029063 -
Seca1g00530 387 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 387 IPR016461 GO:0008168
Seca1g00530 387 SUPERFAMILY "Winged helix" DNA-binding domain 17 119 IPR036390 -
Seca1g00530 387 Gene3D Vaccinia Virus protein VP39 118 387 IPR029063 -
Seca1g00530 387 Pfam O-methyltransferase domain 141 368 IPR001077 GO:0008171
Seca1g00530 387 PANTHER O-METHYLTRANSFERASE 22 377 IPR016461 GO:0008168
Seca1g00530 387 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Seca1g00530 387 Gene3D - 3 115 IPR036388 -
Seca1g00530 387 PIRSF O-mtase 263 387 IPR016461 GO:0008168
Seca1g00530 387 PIRSF O-mtase 3 247 IPR016461 GO:0008168
Seca1g00530 387 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00530 Seca-Chr1 6380059 6381890 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00530 1 379 Monolignol Biosynthesis Gene Families AT5G54160 45.932 4.51e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00530 - - gmx:100798295 528.094