Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00528 ATGTCTTCCTATGCTCCACTAAGAGATGACACTCATATCCTCTCTGCCATGGTGCTTGGTGCCAATATAGTCTTTCCTGTGGCCTTTAACGCTGCAATTGAGCTCAAACTATTTGATATAATTGCTAAGGAAAGCTCTCCACAAAGTGGTAGATTCATGTCAGCCTTTGAAATTGCTTCCAAGCTACCAACTCAACACTCTGACTTGCCACATAGGCTTGACCGTTTGCTCCGTTTGCTTGCTAGTTACTCTCTTCTCACTGTTTCCACTCGCACCAATCAAGAAGATGGTAGCGTTGTCATAGTTTATGGAATCTCACCATCTGGTAAATACTTTGTTGATGATGAAAACGGTGATGGTTATCTTGCTTCTTTCACATCTTTTGTGTGTCACCCTGCAATGTTAGGGGTGTGGTTGAATTTCAAGGAAGCAATTGTCGAGCCAGAGATTGACCTATTCAAGAAAGTTCACGGAATATCTGCATATGAGTACTTTGAGAAAGATCCACACATAAGCCATGTATTTAACAAGTCAATGACTGAAATAACCTCAACTCACATGAAAAGAATACTTGAAATATATCATGGATACGAGGGAATATCAACTTTGGTTGATGTAGGGGGTGGAAATGGACAAAGTCTCAAAATGATTATCTCCAAATACCCATCAATAAAGGCGATTAATTTTGATCTCCCACAAGTGACTGAAAATGTACCTCACTATCCAGGTTGTATATTTTTTATTTTATCAAACTATATATTAATAAAAAAGGTTGCCAAATTTTATTTAGGAATTGAGCATGTTGGAGGAAATATGTTCAAAAGCATTCCACAAGGAGATGCTATAATGCTAAAGGCCGTGTGCCATAATTGGTCGGATGAAAAATGCATAGAAATTTTAAGCAATTGTCACAAAGCTCTGCCATCAAATGGAAAGGTCATTATTGTGGAGTTCATACTGCCAGAAGATCCAAAACCAACGAATGCATCTAAAATGATTTCACTTCTTGATAACATCATGTTTATCACAGCTGGTGGCGTGGAAAGAACTGAGAAACACTATGAAAGTTTGGGAAAGCGCTCTGGATTTTCTAGGTTTAAATTTGTTTGTTGTGCTTTCTCTATTTTGGGGGTAATGGAGCTTTACAAATAA 1152 0.3802 MSSYAPLRDDTHILSAMVLGANIVFPVAFNAAIELKLFDIIAKESSPQSGRFMSAFEIASKLPTQHSDLPHRLDRLLRLLASYSLLTVSTRTNQEDGSVVIVYGISPSGKYFVDDENGDGYLASFTSFVCHPAMLGVWLNFKEAIVEPEIDLFKKVHGISAYEYFEKDPHISHVFNKSMTEITSTHMKRILEIYHGYEGISTLVDVGGGNGQSLKMIISKYPSIKAINFDLPQVTENVPHYPGCIFFILSNYILIKKVAKFYLGIEHVGGNMFKSIPQGDAIMLKAVCHNWSDEKCIEILSNCHKALPSNGKVIIVEFILPEDPKPTNASKMISLLDNIMFITAGGVERTEKHYESLGKRSGFSRFKFVCCAFSILGVMELYK. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00528 383 PANTHER O-METHYLTRANSFERASE 17 366 IPR016461 GO:0008168
Seca1g00528 383 Gene3D Vaccinia Virus protein VP39 115 383 IPR029063 -
Seca1g00528 383 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 383 IPR016461 GO:0008168
Seca1g00528 383 Gene3D - 4 112 IPR036388 -
Seca1g00528 383 PIRSF O-mtase 253 383 IPR016461 GO:0008168
Seca1g00528 383 PIRSF O-mtase 5 250 IPR016461 GO:0008168
Seca1g00528 383 FunFam Caffeic acid 3-O-methyltransferase 2 112 - -
Seca1g00528 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 380 IPR029063 -
Seca1g00528 383 Pfam O-methyltransferase domain 138 364 IPR001077 GO:0008171
Seca1g00528 383 Pfam Dimerisation domain 28 81 IPR012967 GO:0046983
Seca1g00528 383 SUPERFAMILY "Winged helix" DNA-binding domain 11 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00528 Seca-Chr1 6350098 6352770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00528 7 383 Monolignol Biosynthesis Gene Families AT5G54160 45.238 1.86e-106 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00528 - - gmx:100798295 503.827