LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00527	ATGGATTCCTATTCCTTAGAGAAAGAGAATGATACCCTCTCTGCCATGGTGCTTGGTTTCAATGTGGCTTTCCCTGTCGTCCTTAACGCTTCAATTGAACTCAAACTATTTGAGATCATTGCCAAGAAAAGTGATGATGATGGTTTCATGTCAGCCTTTGAAATTGCTTCCAAGCTACCAACCAAACACTCTGATTTACCAAATAGGCTCGACCGTGTCCTGCGCTTGCTTGCTAGTTACTCTCTTCTCACTGTCTCCACTCGCACCAAAGAGGATGGTAGCATGGTGATAGTTTATGGAATCTCACCATCTGGTAAATATTTCGTTGATGATGAGAACGGTGATGGTAATCTTGCTTCATTCGCATCATTCTCATGTCACCATACTTTGTCAGCAGGGATGTGTGACATGCACAAGAAAGTTCATGGAAAATCTTTATACGAGTACATGGAGAAAGATGTAGAAATGAAGCAAGCATTCAACAAATCAATGAGTGATATAAGCTCAATCCATATGAAAAGAATACTTGAAATATACACGGGATACGAGGGAGTATCAACTTTAATTGATGTCGGAGGTGGAAATGGACAAAGTCTCAAAATGATCATCTCTAAATACCCATCAATCAAGGGAGTTAACTTTGACCTCCCACAAGTTATTGAAAATGCACCACCTTTTCCTGGGATTGAGCATGTTGGAGGGAACATGTTTGAAAGTGTTCCATTTGGTGATGCCATAATATTAAAGGCTATATGTCATAATTGGACAGATGAAAAGTGCATAGAAATTTTAAGCAATTGTTACAAAGCTTTGCCACCAAAGGGGAAGGTCATCGTTGTGGAAATTTTACTGCCAGAAAAACCAGAACCAACAAATGAATCTAAAATTGCTTCCTTATATGATATAATGATGTTTAGCACACATGGCGGAAGGGAAAGAACTGAGAAGCAATATGAGAATTTGGGCAAACACTCTGGATTTTCTAAATTTCAGGTTGTTTGTCGTGCTTTCTCTATTATGGGAGTGATGAAAGAGAACCATGTGGTGGCCCCACAAAGGGATGACAGTCATACCCTGTCTGCCATGGTGCTTGGTGCTAATATGGTGTTTCCAGCAGCACTTAATGCTGCAATTGAACTCAAACTATTTGAGATCATTGCTAAGGAAAGTTCACCTGAAAATGGTGGATTCATGTCAGTCTTTGAAATTGCTTCAAAGCTACCAACTCAACACTCTGACTTGCCATATAGGCTTGACCGTGTGTTGCGTTTGCTTGCAAGTTACGATCTTCTCTCTGTTTCCTCTCGCACCAATGAGGATGGAAGTGTCCTGAGAGTTTATGGCATCTCACCATCTGGAAAATATTTCTTCTTTGATGAAAATAGTGATGGCTATCTTGCCTCATTCACATCATTTCTATGTCACCCTGCACTCTCAGGCTTGTGGTTGAATTTTAAGGAAGCAGTTGTTGATCCTGAGATTGACCTATTCAAGAAAGTAAATGGAATATCTAAGTATGAGTACTTTGGTAAAGATGCACAACTAAACCATGTATTTAACAAATCAATGACCGATATCTGCTCAACTGAGATGAAAAGGATACTTGAAATATACAAAGGATACGAAGGAATATCAACTTTGGTTGATGTAGGAGGTGGACATGGACAATGTCTCAAAATGATTATCTCCAAATACCCATCAATAAAGGGAATTAATTTTGACCTCCCACAAGTCATTGAAAATGCACCACACATTCCAGGGATTGAACATGTTGGAGGAAGTATGTTTGAAAGTGTTCCACAAGGGGATGCCATAGTACTAAAGGCCGTATGCCATAATTGGTCGGATGAAAAATGCATAGAAATTTTAAGCAATTGTTACAAGGCTCTGCCACCAAATGGAAAGGTGATTATTGTAGAGTTGGTACTGCCAGAAGATCCAGAACCAACAAATGCATCAAGAATTGTTTCAATTCTTGATAACATCATGTTTATCACAGCTGGTGGAAGAGAAAGAACTGAAAAACAATATGAGATTTTGGGTAAACGCTCTGGATTTTCTAGGTTTGAAGTTGCTTGTCGCGCTTTCTCTATTTTGGGAGTGATGGAGCTTTACAAATAA	2121	0.3927	MDSYSLEKENDTLSAMVLGFNVAFPVVLNASIELKLFEIIAKKSDDDGFMSAFEIASKLPTKHSDLPNRLDRVLRLLASYSLLTVSTRTKEDGSMVIVYGISPSGKYFVDDENGDGNLASFASFSCHHTLSAGMCDMHKKVHGKSLYEYMEKDVEMKQAFNKSMSDISSIHMKRILEIYTGYEGVSTLIDVGGGNGQSLKMIISKYPSIKGVNFDLPQVIENAPPFPGIEHVGGNMFESVPFGDAIILKAICHNWTDEKCIEILSNCYKALPPKGKVIVVEILLPEKPEPTNESKIASLYDIMMFSTHGGRERTEKQYENLGKHSGFSKFQVVCRAFSIMGVMKENHVVAPQRDDSHTLSAMVLGANMVFPAALNAAIELKLFEIIAKESSPENGGFMSVFEIASKLPTQHSDLPYRLDRVLRLLASYDLLSVSSRTNEDGSVLRVYGISPSGKYFFFDENSDGYLASFTSFLCHPALSGLWLNFKEAVVDPEIDLFKKVNGISKYEYFGKDAQLNHVFNKSMTDICSTEMKRILEIYKGYEGISTLVDVGGGHGQCLKMIISKYPSIKGINFDLPQVIENAPHIPGIEHVGGSMFESVPQGDAIVLKAVCHNWSDEKCIEILSNCYKALPPNGKVIIVELVLPEDPEPTNASRIVSILDNIMFITAGGRERTEKQYEILGKRSGFSRFEVACRAFSILGVMELYK.	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00527	706	Pfam	Dimerisation domain	27	78	IPR012967	GO:0046983
	Seca1g00527	706	Pfam	Dimerisation domain	373	426	IPR012967	GO:0046983
	Seca1g00527	706	Gene3D	-	341	456	IPR036388	-
	Seca1g00527	706	SUPERFAMILY	"Winged helix" DNA-binding domain	9	112	IPR036390	-
	Seca1g00527	706	FunFam	Caffeic acid O-methyltransferase	460	706	-	-
	Seca1g00527	706	SUPERFAMILY	"Winged helix" DNA-binding domain	355	460	IPR036390	-
	Seca1g00527	706	Gene3D	Vaccinia Virus protein VP39	459	706	IPR029063	-
	Seca1g00527	706	PANTHER	O-METHYLTRANSFERASE	361	689	IPR016461	GO:0008168
	Seca1g00527	706	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	16	347	IPR016461	GO:0008168
	Seca1g00527	706	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	362	706	IPR016461	GO:0008168
	Seca1g00527	706	FunFam	Caffeic acid 3-O-methyltransferase	341	456	-	-
	Seca1g00527	706	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	138	336	IPR029063	-
	Seca1g00527	706	Gene3D	-	23	175	IPR036388	-
	Seca1g00527	706	FunFam	Caffeic acid 3-O-methyltransferase	1	108	-	-
	Seca1g00527	706	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	465	702	IPR029063	-
	Seca1g00527	706	Gene3D	Vaccinia Virus protein VP39	157	336	IPR029063	-
	Seca1g00527	706	Pfam	O-methyltransferase domain	136	328	IPR001077	GO:0008171
	Seca1g00527	706	Pfam	O-methyltransferase domain	482	687	IPR001077	GO:0008171
	Seca1g00527	706	FunFam	Caffeic acid O-methyltransferase	112	347	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00527	Seca-Chr1	6301273	6311082	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00527	340	706	Monolignol Biosynthesis Gene Families	AT5G54160	48.649	1.94e-110	337

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00527	-		-	adu:107471788	608.216