Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00524 ATGGGGTTGAAGTTTACAAAGCAGGGACCACCCAAAACCAATAGCCTAAGTTTACATCATCACATGATTAGTTACCTTACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAAAGGAGAAGAATGCTTATTGCTGGCTATGATCTTGACATGTCATATATCACAGATCGAGTATTAGCAATGTCATTTCCAGCAGAAAGAATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTCAAATCTGTGTTGGACATGAGACATAATGAGCATTACAAGGTCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGCACACTTCTATGGGCGTGTGGAAACATTCCCTTTCGATGACAATCATGTGCCATCTCTTGAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCATGGTTATCACAGGACCCAAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGTTTAATGGTGTGTGCATACCTAACTTATTGCGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAATTAGACGGACAACTAATAATGAAGGAGTAAGTTATATTAGGTATCAATACCAAGCCAACGTCGTTATGTGGGGTACTGGGAAAGTCTACTTTCTACCCCTAGGGGCAATGGATATGGATCACCAATGGTAA 672 0.3973 MGLKFTKQGPPKTNSLSLHHHMISYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAERMRAMYRNPLWQVKSVLDMRHNEHYKVYNLCIEESYDPAHFYGRVETFPFDDNHVPSLEMIKAFCESVDSWLSQDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYAIRRTTNNEGVSYIRYQYQANVVMWGTGKVYFLPLGAMDMDHQW. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00524 223 Pfam Tyrosine phosphatase family 128 199 IPR026893 GO:0004721
Seca1g00524 223 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 198 IPR029021 -
Seca1g00524 223 SMART PTPlike_phytase_2 49 168 - -
Seca1g00524 223 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Seca1g00524 223 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Seca1g00524 223 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 23 195 - -
Seca1g00524 223 ProSiteProfiles Phosphatase tensin-type domain profile. 40 203 IPR029023 -
Seca1g00524 223 Gene3D Protein tyrosine phosphatase superfamily 26 203 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00524 Seca-Chr1 6275563 6280956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00524 1 195 Protein tyrosine phosphatase (PTP) family AT5G39400 72.549 1.07e-102 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00524 K01110 - gmx:100809938 361.688