LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00524	ATGGGGTTGAAGTTTACAAAGCAGGGACCACCCAAAACCAATAGCCTAAGTTTACATCATCACATGATTAGTTACCTTACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAAAGGAGAAGAATGCTTATTGCTGGCTATGATCTTGACATGTCATATATCACAGATCGAGTATTAGCAATGTCATTTCCAGCAGAAAGAATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTCAAATCTGTGTTGGACATGAGACATAATGAGCATTACAAGGTCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGCACACTTCTATGGGCGTGTGGAAACATTCCCTTTCGATGACAATCATGTGCCATCTCTTGAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCATGGTTATCACAGGACCCAAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGTTTAATGGTGTGTGCATACCTAACTTATTGCGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAATTAGACGGACAACTAATAATGAAGGAGTAAGTTATATTAGGTATCAATACCAAGCCAACGTCGTTATGTGGGGTACTGGGAAAGTCTACTTTCTACCCCTAGGGGCAATGGATATGGATCACCAATGGTAA	672	0.3973	MGLKFTKQGPPKTNSLSLHHHMISYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAERMRAMYRNPLWQVKSVLDMRHNEHYKVYNLCIEESYDPAHFYGRVETFPFDDNHVPSLEMIKAFCESVDSWLSQDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYAIRRTTNNEGVSYIRYQYQANVVMWGTGKVYFLPLGAMDMDHQW.	224

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00524	223	Pfam	Tyrosine phosphatase family	128	199	IPR026893	GO:0004721
	Seca1g00524	223	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	53	198	IPR029021	-
	Seca1g00524	223	SMART	PTPlike_phytase_2	49	168	-	-
	Seca1g00524	223	ProSitePatterns	Tyrosine specific protein phosphatases active site.	148	158	IPR016130	GO:0016311\|GO:0016791
	Seca1g00524	223	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	128	183	IPR000387	GO:0016311\|GO:0016791
	Seca1g00524	223	PANTHER	PHOSPHATASE WITH HOMOLOGY TO TENSIN	23	195	-	-
	Seca1g00524	223	ProSiteProfiles	Phosphatase tensin-type domain profile.	40	203	IPR029023	-
	Seca1g00524	223	Gene3D	Protein tyrosine phosphatase superfamily	26	203	IPR029021	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00524	Seca-Chr1	6275563	6280956	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00524	1	195	Protein tyrosine phosphatase (PTP) family	AT5G39400	72.549	1.07e-102	301

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00524	K01110		-	gmx:100809938	361.688

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