Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00523 ATGCCCCTCTTCTCCTCACTCCCTAGGTGGATTTGTCGACATGGGAGCACAATCAGCAACGTTGGAGACAGTGTTAGCGGAAGCAGTGATAACACAACGGCGGTTGTGGATGACAATCCAATCACCAGCGTGGTGGAGTGTTACGCCTGCACACAAGTAGGTGTGCCGGTTTTTCACTCCACTAGCTGTGACAGCTGTCACCAGCCTCAATGGGAGGCATCAGCGGGCTCTTCCTTGGTTCCAATTCAGAACCGGGCCGGGAAAGCCCAGAGCGTGCGGGCTATATCCCGGGCTAATTCCGGGCCTTTCGGCACTGTGTTAGATCCTAGGAGCAAGCGCGTGCAAATGTGGAACCGCGCGTTGCTGTTGGCGCGTGGGGTGGCGTTAGCTATAGACCCGCTGTTTTTCTACGCGCTGTCGATTGGGCGTGAGGGTTCGCCGTGCCTGTACATGGACGGTGGGCTGGCGGCGATGGTGACGGTGGCGCGGACGTGTGTGGATGCGGTGCATTTGTTTCATTTGTGGCTGCAGTTCAGGTTGGCGTACGTGTCGAGAGAGTCGCTGGTTGTTGGGTGTGGGAAGCTCGTGTGGGACGCACGTGCTATAGCTTCCCACTACTTGCGATCCTTGAAGGGATTCTGGTTTGATGCCTTTGTTATTCTCCCTGTTCCTCAGGCTGTGTTTTGGCTAATAGTACCAAAATTGATAAGAGAAGAGCGGATTAAAATCATTATGACCATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGTTTTGGTCTCAATCTCATAGCTTATTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAACGTGTTGCATCATGCCTCAGACAACAGTGTGAAAGAACTCATGGATGCAATCTCTCTGTGTCATGCTCAGAGGAGATATGCTACCAGTCTTTGTTACCAGCAGGCACTATTGGAAATTCATGTGGTGGAAACTCAACCTTTGTGGCAAGAAAGCCTTTGTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCCAGTAACTCTTTGGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATTGTACTCAGTGGACTACTGCTTTTCACTTTGTTGATTGGTAACATCCAGGTATTCTTACATGCTGTAATGGCAAAGAAGAGAAAGATGCAGCTTAGATGCCGTGATATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCCCGGTTAAGACAAAGAGTTCGCCATTTTGAACGTCAAAGATGGGCAGCCATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGGCTTAGGAGAGACATCAAGCGCTATCTTTGCCTAGACCTTATTAAAAAAGTACCTCTGTTCCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCCCTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGACCCTGTACAAAGGATGGTGTTTATTGTTCGTGGACGCATAAAAAGGAACCAAAGTCTCAGCAAAGGCATGGTAGCCTCAAGTGTCCTTGAACCAGGAGGATTTTTAGGTGATGAGCTACTTTCATGGTGTCTTCGCCGGCCATTCATAGATAGGCTTCCAGCTTCTTCAGCCACATTTGTGTGTCTTGAATCAGCAGAAGCTTTTGGCCTTGATGCTAATCACTTGAGGTACATCACTGATCACTTCCGTTACAAATTTGCTAATGAGAGGCTAAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACTTGGGCTGCTGTCATCATTCAACTTGCTTGGAGACGTTACAGGAAGAGGACTAGAGGTCCAGTGACCCCTGTAAGGGACAGTAGTGGAGGCACTGAACGCAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAAGCCACATGACCATCTTGAATGA 2133 0.4726 MPLFSSLPRWICRHGSTISNVGDSVSGSSDNTTAVVDDNPITSVVECYACTQVGVPVFHSTSCDSCHQPQWEASAGSSLVPIQNRAGKAQSVRAISRANSGPFGTVLDPRSKRVQMWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIASHYLRSLKGFWFDAFVILPVPQAVFWLIVPKLIREERIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTHGCNLSVSCSEEICYQSLLPAGTIGNSCGGNSTFVARKPLCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVQRMVFIVRGRIKRNQSLSKGMVASSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESAEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVIIQLAWRRYRKRTRGPVTPVRDSSGGTERRLLQYAAMFMSIKPHDHLE. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00523 710 ProSiteProfiles cAMP/cGMP binding motif profile. 522 632 IPR000595 -
Seca1g00523 710 CDD CAP_ED 522 632 IPR000595 -
Seca1g00523 710 Gene3D Jelly Rolls 520 638 IPR014710 -
Seca1g00523 710 Gene3D Helix hairpin bin 448 513 - -
Seca1g00523 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 95 676 - -
Seca1g00523 710 Pfam Ion transport protein 116 440 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca1g00523 710 SUPERFAMILY cAMP-binding domain-like 449 636 IPR018490 -
Seca1g00523 710 SUPERFAMILY Voltage-gated potassium channels 108 443 - -
Seca1g00523 710 Gene3D - 148 445 - -
Seca1g00523 710 SMART cnmp_10 522 648 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00523 Seca-Chr1 6269073 6275039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00523 38 710 Ion Channels AT5G15410 79.179 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00523 K05391 - gmx:100798823 1251.5