Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00509 ATGGACTATACTACTTGGCAACAATTTCAGCAAAACCAAACCCAAATCCAAACCCCTCTCTCGTCATATCCTCCTCCTCCTTCATCATCATCATCTTACACTACCCATTACCTCCCCTACCCTCAAAACCCTAACCCTTCTTCCTCTTCTCTCCCTCAACCCCATGGTGCCACTGCTCTGGAACCTGTTCTCAACCCTCCTGGGGTTGATTCCTATGCTCCATTGAACACCAATCCAATTTCCCATCTGGGTCATGAAGGCCTTCCCAATTTGTCGTACGGTCAAAGCCAATTGGTCGATTCTGGGTACTACTTGGACCCCAATACACAGAATTGGGCTGCTAGAGAGGCTGTGAGGCAGTATGGTGTAGACCCTGTTAGCTATGCAGCTGGCATTACTATGCCATCAAATGGCTCAGAACAATTGGCTGTTGCAAATCCTAACACCACATGGTGGCCAAATACCACCACAACTCAACCTCATGGCAATGGAACATGGAAGAAGCATCCAAAGAAACCTAAAACTAAGATTGTGCAGCCTGCATATTGTGAAGTTTGCAAGATAGATTGCACCAGCAAGGAAGTACTAGACCAGCATAAATTGGGAAAGAAGCACAAGAAGAATGTGGAGAAGCTAAGAGAATCATTGAAACCAATCCAAGTTCTTCCATCTGGGTCATCTAATCCTGTTATAGGACCACAATTACAGAACAGCCAGAGCAACTCTGTTAGTGGGAATAAGAGTAAGAGGAAAAAAGCCTTTTCTCCAGAGGATTTGGAGCAAAAGAAGAAAAAGGTGCTTGAAGGGGGTGCAGCAGCTGAGGCAGTGAAAATATGTGCTATATGTAATGTGGTATGTAATAGTGAGACAGTTTATAACTATCATCTTGCAGGACAAAAGCATGCTGCTATGTTGAAGAAAGCATCTGACCATACACAAACCAATGCAAGTTGA 954 0.4434 MDYTTWQQFQQNQTQIQTPLSSYPPPPSSSSSYTTHYLPYPQNPNPSSSSLPQPHGATALEPVLNPPGVDSYAPLNTNPISHLGHEGLPNLSYGQSQLVDSGYYLDPNTQNWAAREAVRQYGVDPVSYAAGITMPSNGSEQLAVANPNTTWWPNTTTTQPHGNGTWKKHPKKPKTKIVQPAYCEVCKIDCTSKEVLDQHKLGKKHKKNVEKLRESLKPIQVLPSGSSNPVIGPQLQNSQSNSVSGNKSKRKKAFSPEDLEQKKKKVLEGGAAAEAVKICAICNVVCNSETVYNYHLAGQKHAAMLKKASDHTQTNAS. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00509 317 Pfam Zinc-finger of C2H2 type 182 205 - -
Seca1g00509 317 Pfam Zinc-finger of C2H2 type 278 301 - -
Seca1g00509 317 SMART c2h2final6 277 301 IPR013087 -
Seca1g00509 317 SMART c2h2final6 181 205 IPR013087 -
Seca1g00509 317 PANTHER ZINC FINGER PROTEIN 385B-LIKE 24 313 - -
Seca1g00509 317 SUPERFAMILY beta-beta-alpha zinc fingers 152 213 IPR036236 -
Seca1g00509 317 MobiDBLite consensus disorder prediction 219 257 - -
Seca1g00509 317 SMART ZnF_U1_5 274 308 IPR003604 GO:0003676|GO:0008270
Seca1g00509 317 SMART ZnF_U1_5 178 212 IPR003604 GO:0003676|GO:0008270
Seca1g00509 317 SUPERFAMILY beta-beta-alpha zinc fingers 276 307 IPR036236 -
Seca1g00509 317 MobiDBLite consensus disorder prediction 1 71 - -
Seca1g00509 317 MobiDBLite consensus disorder prediction 220 249 - -
Seca1g00509 317 MobiDBLite consensus disorder prediction 1 19 - -
Seca1g00509 317 Gene3D Classic Zinc Finger 165 212 - -
Seca1g00509 317 Gene3D Classic Zinc Finger 243 309 - -
Seca1g00509 317 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00509 Seca-Chr1 6113924 6117310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00509 183 310 C2H2 Transcription Factor Family AT5G61190 30.137 1.01e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00509 - - gmx:100803425 352.829