Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00506 ATGTTTGAAAAGGGACAGTCCATCTTCTGGTGGATTTTCTTTATGTTACTCTATGTTCCTTTACTACTTTCTTCACCCTATGTTGCTGGTTTTTCTAGGAATGTTTCATTGACATTTTCTGCAGTTCATAATGAAATCAAAGTAAAAGACAGTGAAGTGAATGGTCTGTTAAAGTGGAAAGATAGCTTTGATAACCATAGCCAAACTCTATTGTCATCTTGGAGAGGCACTGATCCTTGCAAATGGGAAGGAATTCTATGTGATAAATCCAAGTCTGTCTCTAGCATAAATCTTTCAAATTATGGACTTCAAGGTACACTCCACACACTCAATTTCTCCTTATTCCCCAACCTCCTCAGTTTTAATATCTACAACAACTCCTTTTATGGAACAATTTCCCCACAAATTGGTAACATGTCCAAAGTCAACCATTTGAACTTCTCTTTAAATTTTTTTCATGGTTTCATCCCTCTAGAGATTGGGAAATTGAACAACTTGGAGTATCTAGATACTTACAATAATAACCTTTTTGGTTCCATACCTCAGGAAATTGGAATGTTGAAAAAGCTTAAGATTATTGATTTGTCAAGAAACACGCTCTCTGGTAATATCCCTTTTGCAATTGGTAACATGAGCAATTTAAATGAACTTTACCTTGATAACAACCACCTTTCTAGTACAATTCCTTCCACTATTGGAAACTTGACAAAGCTCACTATATTATACTTAGGCTTAAATAACCTTTTTGGATCAATTCCTGCATCTATAGGAAATTTGATCAGTTTGCATACCCTCTACCTCCAAGGAAACAATCTCTCTAGTTCTATTCCTTCCACAATAGGAAATCTGGTATTACTCACCTCACTGGGATTGTCCTCTAACAATCTTAATGGTTGGATTCCACAGGAAATGAATAACATTACCAACTTTAAATTCTTGCAATTATCTAATAATGATTTCATTGGTCATTTGCCACCTCAAATCTGCTCTGGTGGGTCACTAGCATTCTTTGCTGCTGATCACAACCGTTTAATAGGTCCAACACCAAGAAGCTTGAAGAATTGTTCTAGTCTTGTCAGAGTGAGGCTTGAAGAAAACCAAATTGCAGGAAATATAACAGAAGATTTTGGCATATATCCAAATTTGAAATACATTGATCTGAGTGGCAATAGATTCTATGGCCACATTTCACCAAATTGGGGAAAGTGCCTTAATCTTGATACCCTTAAGATATCAAACAACAATATTTCTGGTGCTATACCACTTCAATTTGTTGAGGCAACCAACTTAGGCAGGCTTCACCTCTCTTCAAACAACTTGATAGGAAACCTTCCCAGAGAACTAGGGAATCTAAAATCATTAATTGAGGTTAAGATCAACAACAATCATATCTCAGGAAACATTCCCACAGAAATAGGACTGATAAGGAATCTTCAACACTTGAATCTAGGAGGAAATGAGTTCAGTGGCACAATACCAAAACAAGTTGTGGGGTTACCTAACTTATTGGAATTGAATTTGAGCAACAATAAAATAAAGGGAAGCATTCCCTCTGAGTTTAGCCAACTACAGCCTCTTGAATCTCTTGATCTCAGTGGTAATTCTTTGAGTGGAACAATACCAAGAATAGTTGGAGAGTTGCGGCGCCTGCAATTGTTGAACCTCTCACATAACAATCTTTCTGGCACTATTCCATCTAGTTTTGATGAGATGTCAAGCTTGGTTTCTGTTGACATATCTTACAATCAATTAGAAGGTCCACTTCCAAAAAATCAAGCCTTTCTTAAATCACCTATAGATTCATTGAGAAACAATAAAGGCTTGTGTGGTAATGTTACTAGCTTGGCACTTTGCCCAACCAATCACAATCCAAAGAGTGTCAAAGTCATGCTATTGGTAATATTCCTTATCTTGGCCACTTTGATACTAGTATTTTGTGGGGTGGGAGTTTCAATATATATTCTTTGTGGAAGTAGAAGAAAGAAAATAACTCATATTGAACAACAAAATGGAGAACTCTTTTCTATATGGAGTTGTGATGGGAGAATAATTTATGAAAATATAATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGCAAGGGGAGGGCAAGGGTGTGTTTACAAGGTTGAGTTGCCTACAAGCTTAGTTGTTGCTGTAAAGAAACTTCACTCTCTAACAAATGAGGAAACATCCAATTTCAAAGCTTTTACAAGTGAGGTTCAAGCCTTGACAGAACTCAAACACCGTAACATTGTAAAGTTGTATGGATTTTGTTCACATTCACAATTCTCATTTTTGGTTTATGAGTTCTTAGAAGGAGGGAGCCTTGATCAAATACTAAATAATGAGACACAAGCAATGGCATTTGACTGGAAAAGGAGGGTAAATGTTGTAAAAGGTGTGGCTAATGCTTTATCTTATATGCATCATGATTGTTCACCTCCCATAGTTCATTGTGACATATCTAGCAAGAATGTTCTTCTAGATCTTGAATATGAAGCTCATATTTCTGATTTTGGGACTGCTAAGTTTCTGAAGCCTGGTCCATGCAGTTGGACCCCACTTGTTGGCACCTTAGGTTATATTGCTCCAGAGCTTGCCCTGGCGATGGAAGTGAATGAGAAATGTGATGTTTACAGTTTTGGAGTGCTTTGTTTAGAAATTCTTATGGGAAAGCATCCAGGAGAGCTTATGTCTTCATTGGTGTCATCATCAACAGCGTTAATGACTTACAATTTATTCTTGATTGATGTGTTAGATAAACGAACTCTTCAACCTATGAAATCGATGGTTGGCGAGGTCATTATGATAGCAACATTGGCATTAGCTTGCTTAAGTGAAAATCCAAATTTTCGGCCAACCATGGATCAAGTATCTAAAGAGCTTATGATGGGGAGATCACCTTTAGTGGACCAATTCCATACTATTAGACTTGGACATTTGCACTAA 2958 0.3678 MFEKGQSIFWWIFFMLLYVPLLLSSPYVAGFSRNVSLTFSAVHNEIKVKDSEVNGLLKWKDSFDNHSQTLLSSWRGTDPCKWEGILCDKSKSVSSINLSNYGLQGTLHTLNFSLFPNLLSFNIYNNSFYGTISPQIGNMSKVNHLNFSLNFFHGFIPLEIGKLNNLEYLDTYNNNLFGSIPQEIGMLKKLKIIDLSRNTLSGNIPFAIGNMSNLNELYLDNNHLSSTIPSTIGNLTKLTILYLGLNNLFGSIPASIGNLISLHTLYLQGNNLSSSIPSTIGNLVLLTSLGLSSNNLNGWIPQEMNNITNFKFLQLSNNDFIGHLPPQICSGGSLAFFAADHNRLIGPTPRSLKNCSSLVRVRLEENQIAGNITEDFGIYPNLKYIDLSGNRFYGHISPNWGKCLNLDTLKISNNNISGAIPLQFVEATNLGRLHLSSNNLIGNLPRELGNLKSLIEVKINNNHISGNIPTEIGLIRNLQHLNLGGNEFSGTIPKQVVGLPNLLELNLSNNKIKGSIPSEFSQLQPLESLDLSGNSLSGTIPRIVGELRRLQLLNLSHNNLSGTIPSSFDEMSSLVSVDISYNQLEGPLPKNQAFLKSPIDSLRNNKGLCGNVTSLALCPTNHNPKSVKVMLLVIFLILATLILVFCGVGVSIYILCGSRRKKITHIEQQNGELFSIWSCDGRIIYENIIEATENFDDKYLIARGGQGCVYKVELPTSLVVAVKKLHSLTNEETSNFKAFTSEVQALTELKHRNIVKLYGFCSHSQFSFLVYEFLEGGSLDQILNNETQAMAFDWKRRVNVVKGVANALSYMHHDCSPPIVHCDISSKNVLLDLEYEAHISDFGTAKFLKPGPCSWTPLVGTLGYIAPELALAMEVNEKCDVYSFGVLCLEILMGKHPGELMSSLVSSSTALMTYNLFLIDVLDKRTLQPMKSMVGEVIMIATLALACLSENPNFRPTMDQVSKELMMGRSPLVDQFHTIRLGHLH. 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00506 985 FunFam Nuclear pore complex protein NUP107 49 206 - -
Seca1g00506 985 Pfam Leucine rich repeat N-terminal domain 50 88 IPR013210 -
Seca1g00506 985 ProSiteProfiles Protein kinase domain profile. 695 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00506 985 SUPERFAMILY Protein kinase-like (PK-like) 677 965 IPR011009 -
Seca1g00506 985 Pfam Leucine rich repeat 476 536 IPR001611 GO:0005515
Seca1g00506 985 Pfam Leucine rich repeat 212 272 IPR001611 GO:0005515
Seca1g00506 985 Pfam Leucine rich repeat 547 584 IPR001611 GO:0005515
Seca1g00506 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 307 622 - -
Seca1g00506 985 PANTHER LEUCINE RICH REPEAT KINASE 2 291 968 - -
Seca1g00506 985 Gene3D Phosphorylase Kinase; domain 1 657 773 - -
Seca1g00506 985 Gene3D Ribonuclease Inhibitor 302 395 IPR032675 -
Seca1g00506 985 Gene3D Ribonuclease Inhibitor 396 493 IPR032675 -
Seca1g00506 985 SMART LRR_typ_2 547 570 IPR003591 -
Seca1g00506 985 SMART LRR_typ_2 211 235 IPR003591 -
Seca1g00506 985 SMART LRR_typ_2 499 523 IPR003591 -
Seca1g00506 985 SMART LRR_typ_2 259 283 IPR003591 -
Seca1g00506 985 SMART LRR_typ_2 163 187 IPR003591 -
Seca1g00506 985 SUPERFAMILY L domain-like 57 347 - -
Seca1g00506 985 Pfam Protein kinase domain 699 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00506 985 Gene3D Transferase(Phosphotransferase) domain 1 774 974 - -
Seca1g00506 985 FunFam Leucine-rich repeat receptor protein kinase MSP1 658 773 - -
Seca1g00506 985 ProSiteProfiles Leucine-rich repeat profile. 501 523 IPR001611 GO:0005515
Seca1g00506 985 FunFam MDIS1-interacting receptor like kinase 2 774 971 - -
Seca1g00506 985 Gene3D Ribonuclease Inhibitor 49 203 IPR032675 -
Seca1g00506 985 Gene3D Ribonuclease Inhibitor 494 618 IPR032675 -
Seca1g00506 985 ProSitePatterns Tyrosine protein kinases specific active-site signature. 819 831 IPR008266 GO:0004672|GO:0006468
Seca1g00506 985 SUPERFAMILY L domain-like 338 610 - -
Seca1g00506 985 PRINTS Leucine-rich repeat signature 526 539 - -
Seca1g00506 985 PRINTS Leucine-rich repeat signature 547 560 - -
Seca1g00506 985 Gene3D Ribonuclease Inhibitor 204 301 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00506 Seca-Chr1 6095822 6099332 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00506 52 867 Receptor kinase-like Gene Family AT4G08850 42.873 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00506 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00506 - - gmx:100803216 1177.93