Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00502 ATGATCCTGATTGGTATTATGTTAGAGCTGGCTTCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGTGCATTTCAGAGGATTTATGGTGGGAGCCAGAGGAACGGTAGTCGTCCTCCTCATTTCTGCAAGAGCAGTGGCTCCATTGCTCGTCACATTCTTCAACAGTTGCAGAACATGAGCATCATTGAGCTTGACACCAAAGGTGGCAGGAGAATCACATCCAGTGGTCGGCGGGATCTTGACCAAGTGGCTGGACGTATTGTAGTTGCCCCTTGA 288 0.4931 MILIGIMLELASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQNMSIIELDTKGGRRITSSGRRDLDQVAGRIVVAP. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00502 95 ProSitePatterns Ribosomal protein S19e signature. 42 61 IPR018277 GO:0003735|GO:0005840|GO:0006412
Seca1g00502 95 FunFam 40S ribosomal protein S19 7 95 - -
Seca1g00502 95 SUPERFAMILY "Winged helix" DNA-binding domain 10 93 IPR036390 -
Seca1g00502 95 PANTHER 40S RIBOSOMAL PROTEIN S19 10 91 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca1g00502 95 SMART Ribosomal_S19e_2 9 94 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca1g00502 95 Pfam Ribosomal protein S19e 9 92 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca1g00502 95 Gene3D - 6 94 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00502 Seca-Chr1 6085076 6086483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00502 11 95 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.059 5.72e-52 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00502 K02966 - gmx:100305587 166.392