Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00499 ATGGCACAATCCATCTGCTGGAGGATTTTCTTCATATCACTCTATGTTCCCTTAATACTCTCTTCATCCTATGTTGCTGGTTTTTCTAGGAATGTTTCTTTGACATTTATAGCAGTTCATGATGAAATCAAAGTAAAAGACAGTGAAGTGAATGGTCTGTTAAAGTGGAAAGCCAGCTTTGATAACCATAGCCAAGCTCTCTTATCATCTTGGACAGGCACTGATCCTTGCAAATGGAAAGGAATTCTATGTGATAAATCCAAGTCTGTCTCTAGCATAAATCTTGCAAATTATGGACTTCAAGGTACACTCCACACTCTCAACTTTTCTTCATTCCCTAACCTCCTTAGTCTTAACATCCACAACAACTCCTTTTATGGAACCATTCCTCCACAACTCAGAAACATGTCTAAACTCAGCCACTTGAACCTTTCTCTAAATTCTTTTGATGGTTTCATCCCTAAAGAAATGTGGACATTGAGGAGTCTACATAGCCTTGATATCTCCTTGTGCCATATAAGTGGAGCAATCCCAAATTCCATAGCAAACTTGGCCAATTTATCAGTTCTAAATTTAGGAGGCAACAATCTTTCTGGCTACATTCCTCTAGAGATTGGGAAATTAAAGAACTTGGAGTCTTTAGATATTGGATACAATCACTTTTTTGGTTCCATTCCACATGAAATTGGAATGTTGACAAACCTTAAGGATATTGATTTGTCACATAACACTTTCTCTGGTAATATCCCTTCTACAATTGGTAACATGAGCAAGTTGAATGAACTTTACCTTAAAGTAAATAAGCTCTCTGGGCCAATCCCACCTTCCATATGGAACCTGACTAACTTATCCTTGCTCTTTCTTAATGACAACAATCTTTTTGGATCAATTCCTACTTCTATAGGAAATTTGGTCAATTTGAATGTCCTTGGATTATATAACAACCACCTTTATGGATCAATTCCTTCTACTATTGGAAACTTGACAAAGCTCACTGGATTAGGCTTGGACTTAAATGATTTTTCTGGATCAATTCCTGCATCTATAGGAAATTTGATCAGTTTGAATACCCTCTACCTCCAAGGAAACAATCTCTCTAGTTCTATTCCTTCCACAATAGGAAATTTGATATTACTCACCTCACTGGGATTGTCCTCTAACAAACTAAATGGTAGCATTCCAAGGGAAATGAATAACATAACCAACTTGTATATCTTACAATTATCTGATAATGATTTCACTGGCTATTTGCCACATCAAATCTGCTCTGGTGGGTCATTAGCATACTTTGCTGCGGATCACAACCATTTAATAGGTCCAATTCCAAGAAGCTTGAAGAATTGTTCTAGTCTAGTTAGGCTCAGGCTTGATGAAAACCAAATAGAAGGAAATATAGCAGAAGATTTTGGCATATATCCAGATTTGAAATATATTGATTTAAGTGGCAATAGATTTTATGGCCACATTTCACCAAACTGGGGGAAGTGCCTTAATCTTGATACCTTTAAGATATCAAATAACAATATTTCTGGTGCTATACCACTTCAACTTGTTGAGGCAAAAACCTTAGGCAGGCTTCACCTTTCTTCAAATCACTTGAGTGGAAACCTTCCTAAAGAACTAGGAAATCTAAAATCATTACTTGAGGTTAAGATCAACAACAATCATTTCTCAGGAAACATTCCCACAGAAATAGGATTGATAAGGAATCTTCAACACTTGGATTTGGCAAGAAATGAGTTTAGTGGCACAATACCAAATCAAGTTGTGGGGTTACCCAACTTATTGGAATTGAATTTGAGCAACAATAATATAGAAGGAAGCATTCCCTCTGGGTTTAGCCAATTACAACCTCTTGAGTCTCTTGATCTGAGTGGCAATCATTTGAGTGGAACAATACCAAGAATAGTTGGAGAGTTGAGGCGCCTGCAATTGTTGAACCTCTCACACAACAATCTTTCTGGAACTATTCCATCTAGTTTTGATGAGATGTCAAGCTTGATTTCTGTTGACATATCTTACAATCAATTAGAAGGGCCACTTCCAAAAAATCAAGCCTTTCTTAAATCACCTATAGATTCAATGAGAAACAATAAAGGCTTGTGTGGTAATGTTACTGGCTTGGCACTTTGCCCAACCAATCACAGTCCAAAGAGTGTGAAAGTCATGCTATTGGTACTTTTTCTTAGCTTGGGCATATTAATATTTTGTGGTGTGGGAGTTTCAATATACATCCTCAGTGGAAGACAGAGAAAGGAAGAAACTCAAATTGAACAACAAACTGGAGAACTCTTTTCAATATGGAGTTATGATGGGAAAATAATTTATGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAACATCTCATTGCTGTGGGAGGGCAAGGGTGTGTTTACAAGGTTGAGTTGCCTACAGGCATGGTTGTTGCAGTGAAGAAACTTCACTCTATAACAAATGAGGAAACATCCAATTTTAATGCTTTTACAAGTGAGGTTCAAGCCTTGATAGAACTCAAACACCGTAACATTGTAAAATTGTATGGATTTTGTTCACATTCACAATTCTCATTTTTAGTTTATGAGTTCTTAGAAGGAGGGAGCCTTGATCAAATACTAAACAATGAGACACAAGCAATGGCATTTGATTGGAAAAGGAGGGTGAATGTTGTAAAAGGTTTGGCTAATGCTTTATCTTATATGCATCATGATTGTTCACCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTCTAGATCTTGAATATGAAGCTCATCTCTCTGATTTTGGGACAGCTAAGTTTCTGAGGCCTGATTCTTGTAGTTGGACACCACTTGTTGGCACATTTGGTTATATTGCTCCAGAGCTGGCACAGGCAATGGAAGTGAATGAAAAATGTGATGTTTATAGTTTTGGAGTACTTTCTTTAGAAATTCTTATGGGAAAGCATCCAAGAGAACTTATGTCTACATTGTCATCACCATCTACAGCACCAATGGCTTGTAATTTACTGTTGATAGATTTGTTGGATGAACGACTTCCTCAACCTATGAATTCAATAGTTGGTGAGATCATCATGATAGCAAGGTTGGCATTTACTTGCTTGAATGAACATCCACATTCTCGCCCAACAATGGATCAAGTATCTAAAGAGCTTTTGATAGGAAAATCACCTTTAGTAAACTGGTTCCCTATGATCAAACTTGGACAACTACACTAA 3231 0.3692 MAQSICWRIFFISLYVPLILSSSYVAGFSRNVSLTFIAVHDEIKVKDSEVNGLLKWKASFDNHSQALLSSWTGTDPCKWKGILCDKSKSVSSINLANYGLQGTLHTLNFSSFPNLLSLNIHNNSFYGTIPPQLRNMSKLSHLNLSLNSFDGFIPKEMWTLRSLHSLDISLCHISGAIPNSIANLANLSVLNLGGNNLSGYIPLEIGKLKNLESLDIGYNHFFGSIPHEIGMLTNLKDIDLSHNTFSGNIPSTIGNMSKLNELYLKVNKLSGPIPPSIWNLTNLSLLFLNDNNLFGSIPTSIGNLVNLNVLGLYNNHLYGSIPSTIGNLTKLTGLGLDLNDFSGSIPASIGNLISLNTLYLQGNNLSSSIPSTIGNLILLTSLGLSSNKLNGSIPREMNNITNLYILQLSDNDFTGYLPHQICSGGSLAYFAADHNHLIGPIPRSLKNCSSLVRLRLDENQIEGNIAEDFGIYPDLKYIDLSGNRFYGHISPNWGKCLNLDTFKISNNNISGAIPLQLVEAKTLGRLHLSSNHLSGNLPKELGNLKSLLEVKINNNHFSGNIPTEIGLIRNLQHLDLARNEFSGTIPNQVVGLPNLLELNLSNNNIEGSIPSGFSQLQPLESLDLSGNHLSGTIPRIVGELRRLQLLNLSHNNLSGTIPSSFDEMSSLISVDISYNQLEGPLPKNQAFLKSPIDSMRNNKGLCGNVTGLALCPTNHSPKSVKVMLLVLFLSLGILIFCGVGVSIYILSGRQRKEETQIEQQTGELFSIWSYDGKIIYENIIEATENFDDKHLIAVGGQGCVYKVELPTGMVVAVKKLHSITNEETSNFNAFTSEVQALIELKHRNIVKLYGFCSHSQFSFLVYEFLEGGSLDQILNNETQAMAFDWKRRVNVVKGLANALSYMHHDCSPPIVHRDISSKNVLLDLEYEAHLSDFGTAKFLRPDSCSWTPLVGTFGYIAPELAQAMEVNEKCDVYSFGVLSLEILMGKHPRELMSTLSSPSTAPMACNLLLIDLLDERLPQPMNSIVGEIIMIARLAFTCLNEHPHSRPTMDQVSKELLIGKSPLVNWFPMIKLGQLH. 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00499 1076 SUPERFAMILY RNI-like 369 679 - -
Seca1g00499 1076 Gene3D Ribonuclease Inhibitor 46 199 IPR032675 -
Seca1g00499 1076 FunFam MDIS1-interacting receptor like kinase 2 isoform A 46 199 - -
Seca1g00499 1076 ProSiteProfiles Protein kinase domain profile. 786 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00499 1076 SUPERFAMILY RNI-like 92 418 - -
Seca1g00499 1076 Gene3D Ribonuclease Inhibitor 588 711 IPR032675 -
Seca1g00499 1076 Gene3D Ribonuclease Inhibitor 490 587 IPR032675 -
Seca1g00499 1076 Gene3D Ribonuclease Inhibitor 298 393 IPR032675 -
Seca1g00499 1076 Gene3D Ribonuclease Inhibitor 394 489 IPR032675 -
Seca1g00499 1076 Pfam Leucine rich repeat N-terminal domain 47 85 IPR013210 -
Seca1g00499 1076 ProSiteProfiles Leucine-rich repeat profile. 594 616 IPR001611 GO:0005515
Seca1g00499 1076 FunFam MDIS1-interacting receptor like kinase 2 865 1062 - -
Seca1g00499 1076 PANTHER LEUCINE RICH REPEAT KINASE 2 349 1058 - -
Seca1g00499 1076 FunFam MDIS1-interacting receptor like kinase 2 isoform A 298 397 - -
Seca1g00499 1076 FunFam Leucine-rich repeat receptor protein kinase MSP1 749 864 - -
Seca1g00499 1076 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 200 297 - -
Seca1g00499 1076 SMART LRR_typ_2 280 303 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 592 616 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 304 328 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 184 208 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 352 376 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 400 424 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 232 256 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 136 160 IPR003591 -
Seca1g00499 1076 SMART LRR_typ_2 640 663 IPR003591 -
Seca1g00499 1076 ProSitePatterns Tyrosine protein kinases specific active-site signature. 910 922 IPR008266 GO:0004672|GO:0006468
Seca1g00499 1076 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Seca1g00499 1076 Pfam Leucine rich repeat 233 293 IPR001611 GO:0005515
Seca1g00499 1076 Pfam Leucine rich repeat 569 629 IPR001611 GO:0005515
Seca1g00499 1076 Gene3D Transferase(Phosphotransferase) domain 1 865 1061 - -
Seca1g00499 1076 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 400 715 - -
Seca1g00499 1076 Gene3D Ribonuclease Inhibitor 200 297 IPR032675 -
Seca1g00499 1076 Pfam Leucine Rich Repeat 642 662 IPR001611 GO:0005515
Seca1g00499 1076 PRINTS Leucine-rich repeat signature 619 632 - -
Seca1g00499 1076 PRINTS Leucine-rich repeat signature 640 653 - -
Seca1g00499 1076 Pfam Protein kinase domain 788 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00499 1076 Gene3D Phosphorylase Kinase; domain 1 747 864 - -
Seca1g00499 1076 SUPERFAMILY Protein kinase-like (PK-like) 768 1056 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00499 Seca-Chr1 6065711 6069512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00499 49 958 Receptor kinase-like Gene Family AT4G08850 44.672 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00499 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00499 - - gmx:100815688 1302.35