Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00494 ATGGCTAAGTCTCACTATTTGGATCCTCTGGCCTTTTTCATAGTTCTCTTCTTACAAGCCATGTTAGCTACTGGCCAATGGTATTCTGCTCATGCAACCTTCTATGGAGATTTGCAAGGCAGAGGAACCATGGGGGGTGCTTGTGGTTATGGTGATCTCTTCCAGCAAGGGTATGGGCTTGCAACCACAGCACTAAGCACAGCTCTATTCAACAATGGATTCTCTTGTGGTGCTTGTTTTGAAATCATATGTGACAATGATCCCCAATGGTGCATAAAGGGTGCAGGTGCAATCAGAGTGACAGCAACAAATCTTTGTCCTCCCAATTACTCAAAGCCTTCTGGCAATTGGTGTAACCCTCCACTAAGTCACTTTGACTTGACACAGAAAATGTTCACCACTATTGCTTATTACAGAGCAGGGATCATCCCTGTCTTATATCGTCGTGTTCCATGCTTCAAAACTGGGGGTGTCAAGTTTGAGATCAGAGGAAACCCTTATTTTTTTTCTATTTTGGTGTACAATGTGGCCAATGCTGGTAATGTTTACCATGTAAGTATCAGAGGGTCTTCTACCAGTTGGATGCAAATGTTTCACAATTGGGGACAAATTTGGAGTGTTGATAAAGTGAATTTCGTAGGGCAAGCATTGTCATTTCAAGTTACCACCAGTGATGGTAAAATGTTGGAGTTTGATAATGTCATTCCTTCATATTGGCGATTCAGACAGACCTTTCAGGCCAATAGAAATTTTTAG 756 0.4206 MAKSHYLDPLAFFIVLFLQAMLATGQWYSAHATFYGDLQGRGTMGGACGYGDLFQQGYGLATTALSTALFNNGFSCGACFEIICDNDPQWCIKGAGAIRVTATNLCPPNYSKPSGNWCNPPLSHFDLTQKMFTTIAYYRAGIIPVLYRRVPCFKTGGVKFEIRGNPYFFSILVYNVANAGNVYHVSIRGSSTSWMQMFHNWGQIWSVDKVNFVGQALSFQVTTSDGKMLEFDNVIPSYWRFRQTFQANRNF. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00494 251 Gene3D - 17 152 IPR036908 -
Seca1g00494 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Seca1g00494 251 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Seca1g00494 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Seca1g00494 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Seca1g00494 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Seca1g00494 251 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Seca1g00494 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 247 IPR007117 -
Seca1g00494 251 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Seca1g00494 251 Gene3D - 157 251 IPR036749 -
Seca1g00494 251 SMART dpbb_1 62 147 IPR007112 -
Seca1g00494 251 PANTHER EXPANSIN-A15 19 249 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Seca1g00494 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Seca1g00494 251 CDD DPBB_EXPA_N 26 152 - -
Seca1g00494 251 SUPERFAMILY Barwin-like endoglucanases 16 175 IPR036908 -
Seca1g00494 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Seca1g00494 251 Pfam Expansin C-terminal domain 158 236 IPR007117 -
Seca1g00494 251 Pfam Lytic transglycolase 62 147 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00494 Seca-Chr1 6009351 6010553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00494 27 251 Expansin Gene Family AT5G39280 58.667 2.51e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00494 - - gmx:100789595 350.517