LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00491	ATGGCGGACGTTCGAGTCATCTCGAGCAGCACAATCCAGCTGGCACCGAAAACCGACTCAACTGATCAAAAAATCCATCTAACTCCTTGGGATCTCAAGTTCCTCAAACTTGAGATGAACCGAAAAGGTCTTCTTTTTCACACAGAAGAAAAAGAAATAATAATCCATCACCTCAAAAACTCCCTCTCCTCCACTCTTGCATTTTTTCCTGTCCTCGCTGGCCGTCTCATCATAACTGAACACCAAGAAAACAACACTGCCTCTTGTTTCATCGCATGCAACAACGTAGGCGCTTTGTTTGTCCACGCTGCCGCAAAGAATACCACTGTTGCTGACATCATTCAACCTGAATATGTTCCTCCAATTGTTCACTCTTTCTTTGCACTTAACGGAGTTAGCAACTATGACGGCACATCACAGCCATTGCTGGCGGTGCAGGTTACGGAGCTACTTGACGGTATTTTCATCGGCTTCACAATCAACCATGTGGCAGCAGACGGAGAATCGTTATGGAATTTTGTGCATTCATGGGCTGAAATCTCACGTGCTGCCCACAAAGGAACGCAGTTGGAGAAAATATCCAATCTCCCTGTACTTGAACGTTGGTTTCCAGATGGCATTAACCCTCCCATTCCCTTTCCTTTGGCAAAGGAAGAAGAGAAGCAACAACAACAAGCCTCTAAAACCTCCAACCCACAACCGCCACAGCCAATTCGGATCTTCCATTTCACAAAGGAGAAAATTGCAAAACTAAAATCAAAAGCAAATGCAGATGCCAACACCAACAAAATATCTTCCCTACAAGCACTTTTAACTCACCTCTGGCGCTGTGTGGTCCGTTGCCAACGCATTGACCCAGAAAAGGAGACCTATTACGCCTTACAAATAAGCGTTAGATGGAGAATGGTTCCACCGTTGCCAGAGAATTACTTTGGAAACGCGGCAATGTCTGGTGTTGTGAAAATGAAAGCAGGGGAATTACTTGAAGGTGGGTTGGGGAAAGGTGGTTGGGAGATGAATAAGATGATAGGTTTGTATAGTGATGAGAAGGTGAAGAGTCATTATGAGTCTTGGGTGAGAGGTCCAGATATGGTTAAGATGAGTAGAATGACTGAGGCTGGTAGAAGTAGTACATGTGTCTTGATCACTAGCAGTTCCCCAAGGTTCAATGTTTATGGTATTGATTTTGGTTGGGGAAAGCCTGTGGCAGTTCGGAGTGGTAATGCGAATAATATGAATGGAAAGGTCTCTTTGTTTGCTGGCGCAGAAGAAGGTAGTATTAACATTGAAGTGTCCCTTTCTCATGAGATTTTGGAGGCCATGGGAAATGACATTGAGTTCATGGATGCCGTTTTCAACTAA	1362	0.4442	MADVRVISSSTIQLAPKTDSTDQKIHLTPWDLKFLKLEMNRKGLLFHTEEKEIIIHHLKNSLSSTLAFFPVLAGRLIITEHQENNTASCFIACNNVGALFVHAAAKNTTVADIIQPEYVPPIVHSFFALNGVSNYDGTSQPLLAVQVTELLDGIFIGFTINHVAADGESLWNFVHSWAEISRAAHKGTQLEKISNLPVLERWFPDGINPPIPFPLAKEEEKQQQQASKTSNPQPPQPIRIFHFTKEKIAKLKSKANADANTNKISSLQALLTHLWRCVVRCQRIDPEKETYYALQISVRWRMVPPLPENYFGNAAMSGVVKMKAGELLEGGLGKGGWEMNKMIGLYSDEKVKSHYESWVRGPDMVKMSRMTEAGRSSTCVLITSSSPRFNVYGIDFGWGKPVAVRSGNANNMNGKVSLFAGAEEGSINIEVSLSHEILEAMGNDIEFMDAVFN.	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00491	453	PANTHER	FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED	6	448	-	-
	Seca1g00491	453	Pfam	Transferase family	4	448	-	-
	Seca1g00491	453	MobiDBLite	consensus disorder prediction	213	237	-	-
	Seca1g00491	453	Gene3D	-	1	208	IPR023213	-
	Seca1g00491	453	Gene3D	-	215	443	IPR023213	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00491	Seca-Chr1	5972278	5975601	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00491	58	436	Monolignol Biosynthesis Gene Families	AT5G48930	25.758	1.85e-31	123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00491	-		-	gmx:100797643	497.664