Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00487 ATGGAGCAGTTCTATACATCCCTTGTGTTCCTCTTTGTGTCCCTCACCTCTCTCTCCCTCTTCATCCTTTTCTACAGACACAAATCTCCCTTCTCTATCCCCAACCTCCCACCGGGAAAGATAGGATTTCCGATGATCGGAGAGAGCCTTGCGTTCCTGTCCACCGGATGGAAAGGGTACCCAGAGAAGTTCATCTATGAGCGCATAGCTAAATACTCTTCCAAAGTGTTCAAAACCTCACTCTTTGGGGAACCTATGGTTATGTTCTGTGGATCTGCATGCAACAAGTTCTTGTTTTCTAACGAGAACAAGCACGTCATGGCTTGGTGGCCTGACAATGTGAACAAGATATTCCCATCGTCAGTTGAAACAAGCTCAAAGGTGGAAGCTAAGAAGATGAGATCCATGCTCCCTCAATACCTCAACGCCAAAGCTCTCCAACGTTATGTTGGTATTATGGATGTAATTGCTCAAAGGCATTTTGCTTCTGAATGGGAGAACAAGAAGGAGGTCACTGTATTCCCATTGGCCAAAAGTTATACGTTTTGCTTGGCTTGTCGTTTGTTCATGAGCGTTGAGGATCCAAACCAGATAGCAAAATTTGCAGAACCTTTCAATCTAATAGGCTCAGGAATCTTGTCAATCCCAATTGATTTGCCAGGAACACCACTCAATCGAGCAGTGAAGGCCTCTAAGTTCATCAGAGAGGAACTATTGAAAATCATCAAACAGAGGAAGGTGGATTTGGCTGATGGGACAGCCTCACCAACACAAGACATATTATCTCACATGTTATTGACAAGCGATGAGAATGGACAGTATATGGCTGAATATGATATCGCAGACAAGATTCTTGGCTTGTTGGTTGGTGGCCATGACACTGCAAGTTCTGCATGCACTTTTGTTGTCAAATACCTTGCTGAGCTCCCTCCACATATTTATCAACAAGTCTATCAAGAGCAAATAGAAATTGCAAAATCCAAATCATCAGGAGAGTTGTTGAATTGGCATGACATAAAGAAGATGAAATATTCGTGGAATGTAGCATGTGAAGTAATGAGACTTTCCCCTCCACTTCAAGGAGCTTTTAGGGAAGTCTTGACTGACTTTATTTTCAATGGATTCTCAATTCCAAAGGGTTGGAAGGTGTATTGGAGTGCAAGTTCAACACATAGGAATCCAGAGTGTTTTCCAGAGCCAGAGAAATTTGACCCGAGTAGATTCGAAGGGGATGGACCAGCTCCATACACTTTCGTACCATTCGGTGGAGGACCGAGGATGTGTCCCGGAAGAGAGTATGCACGAATGGAAATATTAGTTTTCATGCATAACTTGGTGAAGAGGTTCAAGTGGGAAAAGGTTATTCCTAATGAGAAGATTGTGGTTAATCCTATGCCTATTCCTGCCAAAGGTCTTCCTGTTCGTCTTTATCCACACCAAGTTTAA 1446 0.4315 MEQFYTSLVFLFVSLTSLSLFILFYRHKSPFSIPNLPPGKIGFPMIGESLAFLSTGWKGYPEKFIYERIAKYSSKVFKTSLFGEPMVMFCGSACNKFLFSNENKHVMAWWPDNVNKIFPSSVETSSKVEAKKMRSMLPQYLNAKALQRYVGIMDVIAQRHFASEWENKKEVTVFPLAKSYTFCLACRLFMSVEDPNQIAKFAEPFNLIGSGILSIPIDLPGTPLNRAVKASKFIREELLKIIKQRKVDLADGTASPTQDILSHMLLTSDENGQYMAEYDIADKILGLLVGGHDTASSACTFVVKYLAELPPHIYQQVYQEQIEIAKSKSSGELLNWHDIKKMKYSWNVACEVMRLSPPLQGAFREVLTDFIFNGFSIPKGWKVYWSASSTHRNPECFPEPEKFDPSRFEGDGPAPYTFVPFGGGPRMCPGREYARMEILVFMHNLVKRFKWEKVIPNEKIVVNPMPIPAKGLPVRLYPHQV. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00487 481 CDD CYP90-like 68 478 - -
Seca1g00487 481 FunFam Taxadiene 5-alpha hydroxylase 27 479 - -
Seca1g00487 481 Gene3D Cytochrome P450 27 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PRINTS P450 superfamily signature 428 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 SUPERFAMILY Cytochrome P450 31 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 Pfam Cytochrome P450 37 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506|GO:0016705
Seca1g00487 481 PRINTS E-class P450 group I signature 418 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PRINTS E-class P450 group I signature 428 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00487 481 PANTHER CYTOCHROME P450 26 36 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00487 Seca-Chr1 5846789 5851455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00487 26 383 Cytochrome P450 AT5G36110 58.726 1.80e-149 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00487 K20667 - tcc:18589551 788.104