Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00474 ATGGCGTTCATCAATAAACTCGGAAACATACTCAAGAATTCTGCTGTTAAGCACATCAATCAAGATTTTTCTGTGTCTACTCCTTCGTTATTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTTGGAGGTATTTCATATAGCACTGATGATATGAGTCTGCGAGAAGCTTTTGCTCGCTATGGAGAAGTAGTTGATGCAAGGGTTATTATGGATCGTGAAACGGGGAGGTCCAGAGGTTTTGGCTTCATAACTTTTGCATCAAGTGAGGATGCATCTTCTGCCGTTCAGGCCATGGATGGCCAGGATCTTCATGGTCGGAGGATACGAGTGAATTATGCTACTGAAAGGTCACGTCCAGGGTTTGGTGGCGGTGGCTATGGAGGTGGTGGCTATGGTGGTGGTGGTGGCGGCGGCTATGGTGGTGGCGGTTATGGTGGTAGTAATTATGGAGGTAATGATAACAATAGGGGTGGAAGCTATGGTAGCAGTGGTTATGGTGTCACTGGCGTTGGCAGCTATGGCAGCAGCAATACTGAAACTAGTTACACTGGTGGTGCTGCTAGCAGTTACCAATTCAATGAAAATTCCGGTGGATTTGGTAGCAACCAAAATGACAGAACAAGTGCAGATGCTGATGAATTCATGGAGCCACTTGAAGACAATGATGTGAGGGAGAACAATGATGAACCTGATGACTATGCTCAGACAAAGAGGTGA 726 0.4559 MAFINKLGNILKNSAVKHINQDFSVSTPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFASSEDASSAVQAMDGQDLHGRRIRVNYATERSRPGFGGGGYGGGGYGGGGGGGYGGGGYGGSNYGGNDNNRGGSYGSSGYGVTGVGSYGSSNTETSYTGGAASSYQFNENSGGFGSNQNDRTSADADEFMEPLEDNDVRENNDEPDDYAQTKR. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00474 241 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 199 - -
Seca1g00474 241 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 155 - -
Seca1g00474 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Seca1g00474 241 SUPERFAMILY RNA-binding domain, RBD 24 148 IPR035979 GO:0003676
Seca1g00474 241 SMART rrm1_1 41 114 IPR000504 GO:0003723
Seca1g00474 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Seca1g00474 241 MobiDBLite consensus disorder prediction 179 241 - -
Seca1g00474 241 Gene3D - 14 135 IPR012677 -
Seca1g00474 241 MobiDBLite consensus disorder prediction 179 211 - -
Seca1g00474 241 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00474 Seca-Chr1 5521320 5525161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00474 42 120 Eukaryotic Initiation Factors Gene Family AT1G49760 35.443 6.85e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00474 K12741 - gmx:100818300 294.278