Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00473 ATGGCTGTAGAGGAGTCTGAGCATGTGATTCCGGAGCTAGAAAGGGAGGAAAATTTAATTGCTGCAGCAAGGCATATTGTGATGGCATTAGGATCAAAGAAGAACCTTACTAGTGATACCAAGAAAATTCTGGCAGATCTTGGCACACAGTTGTCTTCCATAACCATACACAGTGAGAAGGAGGAGGGGAAGCAAGGGCAAAGGGAGGATTGTATTGATGAGGTGGAGGAAGAGGAGGAGCAGGAGGAGGGTGTTAGTGTTATTGAAGAAAGGCTTAGTGTGATTCAGGAGAAAATAATGAGATGGGAGGAAGATCAGTCCATGATATGGGATTTGGGACCTGAAGAAGCATCTGAATATCTGAATGCAGCTAATGAAGCCCGCAGATTGATTGAGAAGCTGGAGAGTATGCATTTGAATAAAGAGGATCAAGAGTATAAGATTATGCAGAGAGCTTATAGTGTTCTTCAAACAGCTATGGCAAGGCTTGAAGAAGAATTCAGGAACTTGCTTATCCAGAACAGGCAACCTTTTGAACCTGAATATGTCTCTTTTCGATCCAGTGAGGAAGATGCTGTTGATGAGAACTCTATAGTCTTTTTAGGTGATGAATCAGTTGAGGAATCACTTCAAAGAGATAGTGTCAGCAGAGCCTCTGAGGAGCATATCATTGATTTAGTTCATCCAGCTGTGATCCCAGATCTCAGGTGTATTGCAAACTTACTGTTTGCTTCTAATTATGTCCAGGAATGTTCCCATGCTTACACCATTGTCCGGAGGGATGCCTTAGATGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTCAGCATTGAGGATGTCTTGAAAATGGAGTGGGGTACTTTGAATTCAAAGATCAAAAGATGGATTTGGGCTGTGAAAATCTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTTAGTGACCAGATTTTTGGGGAGGGTGAGCCTGTCAGTCAAGCCTGTTTTGTTGATGCATCTAAGGCTTCAATATTGCAGCTTCTGAATTTTGGTGAAGCCATGTCTATTGGCCCTCACCAACCTGAGAAATTGTTTAGAATTCTTGACATGTATGAAGTTCTAGCAGACCTTATGCCAGACATTGATGCTTTGTATTCAGATGAGGTTGGTTCCTCTGTTAAAATTGAATGTCATGAGGTTCTCAAGAGATTAGGTGATTGTGTAAGGGCAACATTTATTGAATTTGGAAATGCCATTGCATCAAATGCATCAACAACCCCTTTTGTAGGTGGTGGGATACATCCTTTGACCAGGTATGTTATGAATTATCTCAGGACTCTTACTGACTACAGTGAAACACTTAATCTGCTTCTGAAGGACCAAGAAGAAGAGGATGCCATTTCACTGTCACCTGATATGAGCCCAGGTACAGAAGAAGATAGCAGAAGCCAGGGATCTCCAAGTAGAGTTTCCTCAATGACCCTCCACTTCAGATCAGTTGCTTCAATCTTGGAATGCAACCTTGAGGAGAAGTCCAAGTTATACAAAGAGACTTCTCTGCAGCATTTGTTCTTAATGAACAACCTACATTATATGGCTGAAAAGGTTAAGGGGTCTGAACTTAGGATCATATATGGAGATGAATGGATTCGAAAGCGCAACTGGAAGTTTCAGCAGCATGCACTAAAATATGAGAGAGCTAGTTGGAGTTCCATTCTCAACTTGCTTAAGGATGAGGGAATTCATGTTCCTGGTACAAATTCTATCTCAAAAAGTCTTCTTAGGGAGAGGTTACGAAGCTTCTACCTTGGCTTTGAAGATGTTTATAGGATCCAAACAGCTTGGCTTATCCCAGATGTTCAGCTTCGTGAAGACTTGAGGATTTCTATATCAGTCAAAGTAATCCAAGCTTATAGGACATTTGTTGGTAGGAACAATAGTCACATAAGTGACAAACACCTTAAATACTCTGCTGATGATTTAGAAAATTACCTTTTGGATTTCTTTGAAGGATCTCAAAAGTGGTTGCAAAATCCCCATAGGAGGTGA 2028 0.4132 MAVEESEHVIPELEREENLIAAARHIVMALGSKKNLTSDTKKILADLGTQLSSITIHSEKEEGKQGQREDCIDEVEEEEEQEEGVSVIEERLSVIQEKIMRWEEDQSMIWDLGPEEASEYLNAANEARRLIEKLESMHLNKEDQEYKIMQRAYSVLQTAMARLEEEFRNLLIQNRQPFEPEYVSFRSSEEDAVDENSIVFLGDESVEESLQRDSVSRASEEHIIDLVHPAVIPDLRCIANLLFASNYVQECSHAYTIVRRDALDECLFILEMERLSIEDVLKMEWGTLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVSQACFVDASKASILQLLNFGEAMSIGPHQPEKLFRILDMYEVLADLMPDIDALYSDEVGSSVKIECHEVLKRLGDCVRATFIEFGNAIASNASTTPFVGGGIHPLTRYVMNYLRTLTDYSETLNLLLKDQEEEDAISLSPDMSPGTEEDSRSQGSPSRVSSMTLHFRSVASILECNLEEKSKLYKETSLQHLFLMNNLHYMAEKVKGSELRIIYGDEWIRKRNWKFQQHALKYERASWSSILNLLKDEGIHVPGTNSISKSLLRERLRSFYLGFEDVYRIQTAWLIPDVQLREDLRISISVKVIQAYRTFVGRNNSHISDKHLKYSADDLENYLLDFFEGSQKWLQNPHRR. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00473 675 Coils Coil 85 105 - -
Seca1g00473 675 MobiDBLite consensus disorder prediction 467 482 - -
Seca1g00473 675 MobiDBLite consensus disorder prediction 57 71 - -
Seca1g00473 675 SUPERFAMILY Cullin repeat-like 105 663 IPR016159 -
Seca1g00473 675 Coils Coil 146 173 - -
Seca1g00473 675 MobiDBLite consensus disorder prediction 460 482 - -
Seca1g00473 675 Gene3D Exocyst complex component Exo70 99 670 - -
Seca1g00473 675 Pfam Exo70 exocyst complex subunit 293 659 IPR046364 GO:0000145|GO:0005546|GO:0006887
Seca1g00473 675 PANTHER EXOCYST COMPLEX PROTEIN EXO70 82 664 IPR004140 GO:0000145|GO:0006887
Seca1g00473 675 Coils Coil 117 144 - -
Seca1g00473 675 MobiDBLite consensus disorder prediction 56 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00473 Seca-Chr1 5495950 5497977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00473 12 675 EXO70 exocyst subunit family AT3G29400 49.631 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00473 K07195 - gmx:100799102 1180.62