Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00471 ATGGAGCAAAGACAGATCTTTGTTCATGTGGTGATTTTCTTGTTTATGGTCCTACTTAGAGCAACTTATTATGGCACTGTTAAAGCAGAAGGAGGAAGAGAAGAAGCTGATAGGATTTTGGAACTCCCTGGTCAACCCAAGGTGTCATTTCAGCAGTTCTCTGGCTATGTTACTGTCAATAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTTCCCAAAATCCTCTCACCAAACCCCTTGTTATTTGGCTCAATGGAGGTCCAGGTTGTTCATCCGTGGCATATGGAGCATCCGAAGAGATTGGACCATTTAGGATTAACAAGACAGCTTCAGGACTATACATTAACAAGTTCTCATGGAACACTGTGGCCAACCTCTTATTCTTGGAAACTCCGGCCGGCGTTGGCTTCTCCTACACCAACCGCTCCTCCGATCTTCTCGACACCGGCGACCGCCGCACTGCGAAAGACTCTTTGGAATTTGTAATCCAATGGCTAGAACGATTTCCACGTTATAAGAACAGGGAGCTATACATCAGTGGAGAGAGCTATGCAGGGCATTATGTGCCTCAATTAACTAAGGAAATCATAACCTATAACACACAAACCAAGCACCCTATCAATCTCAAGGGCATAATGGTTGGGAATGCAGTGACAGACAACTATTATGATAACTTGGGGACAGTAACGTACTGGTGGAGCCATGCTATGATATCGGATGAGACATACAGACAATTGATGAGCACGTGTGATTTTCACCGTCAGAAGGAATCCGATGAATGTGAGTCTCTATATAGCTACGCCATGGATCAAGAGTTTGGTAACATTGATCAATACAACATCTATGCTCCTCCTTGCAACCACTCTGATGGCACCTCTTTCACTCGCCATTCCATTCGCTTCCCTCACCGTCCCCATCTGCAGGGTTTGAGGCAATTGTCTGGTTATGATCCATGTACGGAAAAATATGCAGAGATTTACTACAATAGGCCTGATGTTCAGAAAGCACTCCATGCAAACACAACTGGCATTCCTTATAAATGGACTGCTTGCAGTGAGGTTTTGAATCGAAACTGGAATGATACAGATGTATCTATTCTTCCAATTTATAGAGAGTTGATAGCTCATGGAATAAGAGTTTGGGTGTTCAGTGGGGATGTTGATTCTGTGGTGCCGGTTACAGCAACAAGATATGCACTTGCACAGCTTAAGTTGGCTACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTGAGTGCAATTCAAAATTATTGA 1290 0.4364 MEQRQIFVHVVIFLFMVLLRATYYGTVKAEGGREEADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEASQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLETPAGVGFSYTNRSSDLLDTGDRRTAKDSLEFVIQWLERFPRYKNRELYISGESYAGHYVPQLTKEIITYNTQTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDETYRQLMSTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNHSDGTSFTRHSIRFPHRPHLQGLRQLSGYDPCTEKYAEIYYNRPDVQKALHANTTGIPYKWTACSEVLNRNWNDTDVSILPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLATKIPWYPWYVKNQVSAIQNY. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00471 429 Pfam Serine carboxypeptidase 44 422 IPR001563 GO:0004185|GO:0006508
Seca1g00471 429 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Seca1g00471 429 FunFam Carboxypeptidase 33 291 - -
Seca1g00471 429 Gene3D - 369 428 - -
Seca1g00471 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Seca1g00471 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Seca1g00471 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Seca1g00471 429 Gene3D alpha/beta hydrolase 33 291 IPR029058 -
Seca1g00471 429 Gene3D - 322 359 - -
Seca1g00471 429 SUPERFAMILY alpha/beta-Hydrolases 41 423 IPR029058 -
Seca1g00471 429 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 421 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00471 Seca-Chr1 5460464 5466338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00471 327 425 Calmodulin-binding Proteins AT2G22960 29.293 3.54e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00471 K16297 - gmx:100807680 786.178