Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00467 ATGTTTTCTCCTTCCTCTTCTTGCACTGTTGCTGCTACTACTACTACTTCAGCAATCAAATGGAGGCTCTTTCACAAACCCATAACCCCTCTGCACGTTCTCTTCTGGATTGTCCTACTTTTCTGCTGCAACAAAGCCGTTTTGGCCGATTCCGACGAATCAGTGCTGATTCAGCTCAAGAACTCACTCTCCGACCCTTCGGGTTTGCTCTCGAGCTGGGACCCCACCAAGGGTTCGAGCCACTGTTCCTGGTTCGGTGTCCTCTGCGACTCTCTTTCGCACCGCGTCGTCGCGATCAACGTCACCGGCAACGGAGGTAACCGAACAAACCCTTCTCCGTGTTCCGATTTTACTGAATTTCCCCTCTACGGTTTTGGAATTAGGAGGAGCTGTGAGGGTAGTGGAGGGGCATTGTTTGGGAAGTTTTCCCCTTTGTTCAGTAAGCTCACTGAGCTTAGGGTTTTGTCCCTTCCCTTCAACGGTTTGGAGGGTGTGATTCCTGATGAAATTTGGGGTATGGAGAAGTTGGAGGTTCTTGATCTTGAGGGAAATTTGTTAAGTGGGTATCTTCCTGTTCGGTTTACTGGGTTGAGGAACTTGAGGGTTCTTAATCTAGGGTTTAATAGGATTGTTGGGGAGATACCAAATTCGTTGTCAAGTGTTGCAGGTTTGGAGGTTTTGAATTTGGCTGGAAATGGCATCAATGGTTCTGTTCCTGGTTTTGTTGGTAGGCTGAGAGGGGTGTATCTGTTTTTCAATCTGCTTGGTGGGACTATTCCGCAAGAGATAGGTGATGATTGTGGGAGGCTTGAGCATCTTGATTTGTCTGGGAATTTCCTGGTTCAGGGGATTCCAAGTAGTTTGGGGAATTGTACTGAGTTGAGGACTCTTTTGCTGTATTCAAATTTATTGGAGGATGTTATTCCAGCTGAGCTTGGTAAGCTTAAGAAGCTTGAGTTGTTGGATGTTTCAAGGAATACTCTTGATGGTGTGGTGCCCCATGAGCTTGGGAATTGTACAGAATTGTCTGTCCTTGTTTTGTCTAATCTGTTTAATCCACTGCGGGATGTCAATTCAGCTTCTACAACTGATGAATACAATTATTTTGAAGGTTCGATTCCTGAGGAAATTATGAGCCTTCCTAAGCTGAGAATACTGTGGGCGCCAAGGGCAAATCTGGAATACAGCTTTCCAAGCAGTTGGGATACTTGTGATAACTTGGAGATTCTCAATTTGGCTCGCAATGATTTCACTGGGGATTTTCCTAATCAGCTTACTCGCTGCAAGAAGCTTCATTTTCTTGATTTAAGCTCAAACAACCTTACTGGCAAGCTCCCAGAAGAACTTCCTGTTCCTTGTATGACTGTGTTTGATGTTAGTGGAAATGTCTTATCTGGCTCAATTCCTAAATTCTCTATTGATGCGTGTCCCTCAGTTCCTTCCTGGAATGGAAATCTGTTTGAAACTGACAACAGAGCCCTTCCATACGGCTCCTTTTTTGCTTCAAAGGTTCTTGGAGGGCCCCTTTTGTTGTCACTAGGAGAAGTTGGCCGTTCCATTTTTCACAACTTTGGTCAAAATAACTTCATTAGCATGGAGTCATTGCCAATAGCACGTGACAAATTGGGGAAGGGATTTGTTTACTCAATTCTTGTTGGAGAAAACAACCTGGCAGGACTGTTTCCTACTAATTTATTTGAGAAATGTGATGGATTAAATGCATTGCTTTTAAATGTGAGTTATACTAGGTTATCTGGTCCGATTCCTTCCAAGTTTGGCGGAATGTGCAGATCGTTAAAATTCTTGGATGCATCTGGAAATCAGATTACCGGGCCAATCCCCCCTGGTTTAGGGGACTTGGTGTCTCTTGTTGCTCTGAACCTGAGTCGGAACCATTTACAAGGTCAGATTCCCACCAGCCTTGGCCAGATGAAGGATCTGAAGTTTCTCTCTCTGGCTGATAATAACTTAAGTGGTTCCATTCCCACCATCCTTGAGCAGCTGTATTCTTTGCAAGTTTTGGATCTCTCTTCAAATTCTCTTTCTGGTGAAATTCCAAAAGGTATTGAAAACTTGAGAAATCTGACTGATATTTTTCTCAACAATAACAATCTCTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTTAATGTGTCATTCAATAACTTATCTGGATCTTTGCCATCAAATAGTAACTTGATAAAATGCAGCAGTGCTGTTGGGAATCCTTACATACGTTCTTGCAAAGGAGTTTCTCTTTCTGTGCCATCAGCAGATCAACATGGGCTGGTTGATAATTCTAATTCTTATACTGCTGCACCACCAGAACCTATGGGCAAAAAGAGTGGGAATGGTTTCAACTCTATTGAGATAGCATCTATAACTTCTGCATCTGCCATTGTGTCTGTTCTTCTAGCCCTAATTGTGCTTTTCATTTATACGCGGAAGTGGAACCCAAGGTCCAGGGTTGTTGGGTCTACAAGAAAAGAAGTTACAGTGTTCACTGACATTGGGGTTCCATTGACATTTGAAAATGTTGTCCGTGCCACTGGAAATTTCAATGCAAGCAACTGCATTGGGAATGGGGGATTTGGAGCAACTTACAAGGCAGAGATATCACCAGGAAACTTAGTGGCAATAAAACGTTTGGCTGTTGGACGATTCCAAGGTGCTCAACAATTCCATGCAGAGGTCAAGACACTTGGAAGGCTTCGTCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTAGTGATACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGTAATCTGGAAAAGTTTATCCAGGAGAGGTCCAGAAGGGCTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGATATAGCTCGAGCACTTGCATACCTGCATGATCAGTGTGTACCGCGGGTGCTTCATCGAGATGTCAAGCCAAGTAATATCTTATTGGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAAACTCATGCTACCACTGGCGTAGCAGGAACATTTGGCTATGTTGCTCCTGAATATGCCATGACATGTCGTGTTTCTGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTACTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCATATGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTTCTGCGACAAGGCCAGGCAAATGAGTTCTTCACTGCTGGTTTATGGGAAGCAGGACCTGCAGATGATTTGGTTGAGGTCCTACACTTAGCTGTTGTTTGTACTGTGGACTCACTCTCTACCAGACCTTCAATGAAACATGTTGTACGGCGGCTTAAGCAACTTCAACCACCATCATGTTAG 3417 0.4372 MFSPSSSCTVAATTTTSAIKWRLFHKPITPLHVLFWIVLLFCCNKAVLADSDESVLIQLKNSLSDPSGLLSSWDPTKGSSHCSWFGVLCDSLSHRVVAINVTGNGGNRTNPSPCSDFTEFPLYGFGIRRSCEGSGGALFGKFSPLFSKLTELRVLSLPFNGLEGVIPDEIWGMEKLEVLDLEGNLLSGYLPVRFTGLRNLRVLNLGFNRIVGEIPNSLSSVAGLEVLNLAGNGINGSVPGFVGRLRGVYLFFNLLGGTIPQEIGDDCGRLEHLDLSGNFLVQGIPSSLGNCTELRTLLLYSNLLEDVIPAELGKLKKLELLDVSRNTLDGVVPHELGNCTELSVLVLSNLFNPLRDVNSASTTDEYNYFEGSIPEEIMSLPKLRILWAPRANLEYSFPSSWDTCDNLEILNLARNDFTGDFPNQLTRCKKLHFLDLSSNNLTGKLPEELPVPCMTVFDVSGNVLSGSIPKFSIDACPSVPSWNGNLFETDNRALPYGSFFASKVLGGPLLLSLGEVGRSIFHNFGQNNFISMESLPIARDKLGKGFVYSILVGENNLAGLFPTNLFEKCDGLNALLLNVSYTRLSGPIPSKFGGMCRSLKFLDASGNQITGPIPPGLGDLVSLVALNLSRNHLQGQIPTSLGQMKDLKFLSLADNNLSGSIPTILEQLYSLQVLDLSSNSLSGEIPKGIENLRNLTDIFLNNNNLSGQIPAGLANVSTLSAFNVSFNNLSGSLPSNSNLIKCSSAVGNPYIRSCKGVSLSVPSADQHGLVDNSNSYTAAPPEPMGKKSGNGFNSIEIASITSASAIVSVLLALIVLFIYTRKWNPRSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEISPGNLVAIKRLAVGRFQGAQQFHAEVKTLGRLRHPNLVTLIGYHASDTEMFLIYNYLPGGNLEKFIQERSRRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQANEFFTAGLWEAGPADDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC. 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00467 1138 SUPERFAMILY L domain-like 550 735 - -
Seca1g00467 1138 PRINTS Leucine-rich repeat signature 668 681 - -
Seca1g00467 1138 PRINTS Leucine-rich repeat signature 431 444 - -
Seca1g00467 1138 SUPERFAMILY Protein kinase-like (PK-like) 841 1130 IPR011009 -
Seca1g00467 1138 SMART LRR_typ_2 692 715 IPR003591 -
Seca1g00467 1138 SMART LRR_typ_2 197 221 IPR003591 -
Seca1g00467 1138 SMART LRR_typ_2 668 691 IPR003591 -
Seca1g00467 1138 SMART LRR_typ_2 149 172 IPR003591 -
Seca1g00467 1138 SMART LRR_typ_2 620 644 IPR003591 -
Seca1g00467 1138 SMART LRR_typ_2 173 196 IPR003591 -
Seca1g00467 1138 SMART LRR_typ_2 315 339 IPR003591 -
Seca1g00467 1138 SMART LRR_typ_2 267 291 IPR003591 -
Seca1g00467 1138 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 287 1132 - -
Seca1g00467 1138 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 537 762 - -
Seca1g00467 1138 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515
Seca1g00467 1138 Pfam Leucine Rich Repeat 199 220 IPR001611 GO:0005515
Seca1g00467 1138 Pfam Leucine Rich Repeat 670 692 IPR001611 GO:0005515
Seca1g00467 1138 CDD STKc_IRAK 865 1133 - -
Seca1g00467 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 935 1137 - -
Seca1g00467 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 979 991 IPR008271 GO:0004672|GO:0006468
Seca1g00467 1138 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 260 354 - -
Seca1g00467 1138 Pfam Protein kinase domain 862 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00467 1138 Gene3D Transferase(Phosphotransferase) domain 1 935 1135 - -
Seca1g00467 1138 Pfam Leucine rich repeat N-terminal domain 49 90 IPR013210 -
Seca1g00467 1138 Gene3D Ribonuclease Inhibitor 547 758 IPR032675 -
Seca1g00467 1138 SMART serkin_6 859 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00467 1138 Gene3D Ribonuclease Inhibitor 364 542 IPR032675 -
Seca1g00467 1138 Gene3D Ribonuclease Inhibitor 244 356 IPR032675 -
Seca1g00467 1138 SUPERFAMILY RNI-like 141 477 - -
Seca1g00467 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 823 934 - -
Seca1g00467 1138 ProSiteProfiles Protein kinase domain profile. 859 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00467 1138 ProSitePatterns Protein kinases ATP-binding region signature. 865 887 IPR017441 GO:0005524
Seca1g00467 1138 Gene3D Ribonuclease Inhibitor 49 243 IPR032675 -
Seca1g00467 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 358 535 - -
Seca1g00467 1138 Gene3D Phosphorylase Kinase; domain 1 822 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00467 Seca-Chr1 5358328 5361774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00467 30 1138 Receptor kinase-like Gene Family AT3G02130 64.186 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Seca1g00467 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00467 - - gmx:100803891 1845.86