Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00463 ATGGCTTCAACCAATGGCCGTAAAGCAAGTGAGATCTTTCAAGGTCAAGCTCTTTTGTACAGACACATATTTGCCTTCATAGACTCTATGTGTCTTAAATGGATTGTTGAACTTAGCATACCAGAAATCATCCACAACCATGGCAAACCCATTACCCTTACAGAGTTGGTTTCAATTCTGCAAGTTCCACAAGGAAAAGTTAGTAATGTGCAGCGTCTCATGCGTTACTTGGCACACAATGGATTCTTTGAGATAGTAAGAATCCAAGAAGATGAAGAAAAGGAAGCATATGCTCTCACTGCTGCATCAGAGCTCCTTGTTAAGGGCACTGACCTCTGTTTAGCCCCAATGGTTGAGTGTGTTCTTGACCCTACTCTGTCAGGTTCTTACCATCTCTTGAAGAAGTGGATTTATGAGGAAGATCTCACACTCTTTGCTGTCTCCTTAGGATCAGGATTTTGGGACTTTCTTAACAAAAATCCTGAATATAACAGGTCATTCAATGAGGCTATGGCCAGTGATTCTCGGATGATAAACTTGGCACTGAAAGATTGCAATTTGGTCTTTGAGGGACTTGAATCCATTGTGGATATTGGTGGTGGAACTGGGACCACAGCCAAGATTCTGTGTGAGACATTTCCAAAGTTGAAATGTGTAGTGTTTGATCGTCCACAGGTTGTGGAAAACTTGTCAGGAAGCAACAATTTGACTTATGTTGGTGGGGACATGTTCAATTCTATTCCTAAGGGTGATGCTGTTCTACTTAAGTGGATTTTGCATAATTGGACTGATAAAGATTGCAAAAAGATATTGGGAAAATGTAAAGAAGCTATTTCAAGTAGTGAGAAAAGAGGAAAAGTAATTATCATAGATGTTGTGATAAATGAAAAGAAGGATGAGCATGAAATCATTGCAACAAAGCTCCTTATGGATGTAAACATGGCTTGTCTTAATGGAAAAGAGAGAAATGAAGAAGAATGGGAAAAACTCTTCACGGAAGCAGGGTTCCAAGACTACAAAATAACTCCTTTGACTGGATTTTTATCTCTTATTGAGGTCTATCCTTAA 1068 0.3933 MASTNGRKASEIFQGQALLYRHIFAFIDSMCLKWIVELSIPEIIHNHGKPITLTELVSILQVPQGKVSNVQRLMRYLAHNGFFEIVRIQEDEEKEAYALTAASELLVKGTDLCLAPMVECVLDPTLSGSYHLLKKWIYEEDLTLFAVSLGSGFWDFLNKNPEYNRSFNEAMASDSRMINLALKDCNLVFEGLESIVDIGGGTGTTAKILCETFPKLKCVVFDRPQVVENLSGSNNLTYVGGDMFNSIPKGDAVLLKWILHNWTDKDCKKILGKCKEAISSSEKRGKVIIIDVVINEKKDEHEIIATKLLMDVNMACLNGKERNEEEWEKLFTEAGFQDYKITPLTGFLSLIEVYP. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00463 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Seca1g00463 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 354 IPR029063 -
Seca1g00463 355 Gene3D Vaccinia Virus protein VP39 107 355 IPR029063 -
Seca1g00463 355 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Seca1g00463 355 FunFam O-methyltransferase ZRP4 108 355 - -
Seca1g00463 355 Gene3D - 1 106 IPR036388 -
Seca1g00463 355 SUPERFAMILY "Winged helix" DNA-binding domain 10 110 IPR036390 -
Seca1g00463 355 PANTHER O-METHYLTRANSFERASE 15 340 IPR016461 GO:0008168
Seca1g00463 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Seca1g00463 355 Pfam O-methyltransferase domain 130 337 IPR001077 GO:0008171
Seca1g00463 355 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00463 Seca-Chr1 5269176 5271184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00463 25 353 Monolignol Biosynthesis Gene Families AT5G54160 31.953 1.00e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00463 K22588 K13262 ag:AAC49926 585.489