Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00462 ATGGCTTCTTCTCCCAAGAGCTCCATCAAAATCCATGAGCAATGCCTTGTAGCTCCTCCATCTGCAACCCAATTATCTCTCCCTCTCACATTCTTTGACTTGTTTTGGCTCAAGTTCCACCCAGTTGAACGCATCTTCTACTACACCCTCCCTCTTCCTCTTTCAAACCCATCTTTTTTCTTTGACAAAGTGGTTCCAAAACTCAAAGCCTCACTCTCTCAAACCCTCCAACACTTCCTCCCTTTAGCTGGTAACATCGTTTGGCCTTCTGATTCCAACATACCCTTCATCCAATTCAACCCTGGTGATGGGGTCTCCTTGGTCCTAGCACAGTGTGATGATGAAAATGCAAACTTCAATCAAATATTGGAACACAATTCACCTCGTGAAGCCATAGAATCTCGCGGTTTGGTACCCCATTTGGAATCATCAGATTCTTTTGCAGCTGTTGCCTCCCTGCAGATAACTCTGTTTCCAAACAGTGGCTTTTCCATTGGCATCAGCACCCACCATGCTGCTCTTGATGGAAAATCTTCAACCATGTTCATAAAGGTCTGGGCTTTCATATGCAAATCAGATGAAAATGAAAAGTTTCCATCTTTGGAACCGTTCTTGGACAGGGAAGTCATCAAAGATCGAAATGGCCTAGAAATTTTCCTCATAAATACCTGGGCAGAACTCTCAGGTAACAGCAACAAGCGAAGCTTGGAGATTATGCCAGACTTATCTGAACCAATGTTGGAGAATTCAGTTCGAGCCACGTTCGAGCTCACACGTGGTGATTTGGAGAAGATAAAGAAAAGGGTCTTATCTCAACCAATTGATTCTTCTTCAAAGCCAACAACTTTATCAACCTTTGTTCTTACTTGTGCTTATGTTTCTGTCTGCATTGCCAAAGCCATTGAAGAGGCCGAAGGGGAGAAACAGAAATTTGCTTTTGCATTCTCAATGGATTGCAGGGCTCGGTTAGAGTTAGAGCCTCCAGTACCTGAGAATTATTTTGGCAATTGTGTTTGTTCTAATATAGTGGATACAGAGTCAGAGGACTTCACAAAGGAAGATGGGGTGGTCCTTGTTGCTAAGAAGATTTATAGTGAAATAAAAATGTTGAATAATGAGGAGAAGAGAGCTATTGATGGAATAGAGACAACGATGTCTAGATATGTGTCTCTGCTGAGTGAGGGAGTTAAGGCAATGGGAGTTGCAGGGTCAACGCGGTTTGGAGTTTATGGAATTGATTTTGGTTGGGGAAGGCCTTCTAAGGTGGAGATAGTATCAGTAGATAGAGGATTAACCATTGGCATTGCAGAGAGCAAGGATGGGAAGGGTGGTGTTGAAGTTGGGCTTGTTCTTAATAAGCATGTGATGGATCTGTTTTCTACTTTTTTTCATGCAGGGTTATGCTTTGACTGA 1413 0.4282 MASSPKSSIKIHEQCLVAPPSATQLSLPLTFFDLFWLKFHPVERIFYYTLPLPLSNPSFFFDKVVPKLKASLSQTLQHFLPLAGNIVWPSDSNIPFIQFNPGDGVSLVLAQCDDENANFNQILEHNSPREAIESRGLVPHLESSDSFAAVASLQITLFPNSGFSIGISTHHAALDGKSSTMFIKVWAFICKSDENEKFPSLEPFLDREVIKDRNGLEIFLINTWAELSGNSNKRSLEIMPDLSEPMLENSVRATFELTRGDLEKIKKRVLSQPIDSSSKPTTLSTFVLTCAYVSVCIAKAIEEAEGEKQKFAFAFSMDCRARLELEPPVPENYFGNCVCSNIVDTESEDFTKEDGVVLVAKKIYSEIKMLNNEEKRAIDGIETTMSRYVSLLSEGVKAMGVAGSTRFGVYGIDFGWGRPSKVEIVSVDRGLTIGIAESKDGKGGVEVGLVLNKHVMDLFSTFFHAGLCFD. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00462 470 PANTHER - 9 467 - -
Seca1g00462 470 Gene3D - 247 469 IPR023213 -
Seca1g00462 470 Gene3D - 8 237 IPR023213 -
Seca1g00462 470 Pfam Transferase family 10 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00462 Seca-Chr1 5260174 5261586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00462 9 463 Monolignol Biosynthesis Gene Families AT5G48930 25.647 7.99e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00462 - - gmx:100813762 607.831